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The map label for this gene is rarD [C]

Identifier: 66046590

GI number: 66046590

Start: 4018944

End: 4019828

Strand: Direct

Name: rarD [C]

Synonym: Psyr_3361

Alternate gene names: 66046590

Gene position: 4018944-4019828 (Clockwise)

Preceding gene: 66046588

Following gene: 66046593

Centisome position: 65.95

GC content: 62.6

Gene sequence:

>885_bases
GTGTACAAAGGTGTGGTGCTGTCGGTCCTGGCGTCTACGCTGTTCGGGGTCATGTATTTCTATACGTCACTGATGACCCC
GCTCGACGGTGAAGAAATCTTTGGCTGGCGCATGCTGCTCACCGTGCCATGCGCGACGCTGTTCATGCTGGTCAGCGGTG
ACTGGCAGCGAGTCCGCGAAGTGGCTGTCCGGCTCAGGCAGCAACCGCTGCTGATCTTCGCGCTGCTGCTGTCTTCGGTG
CTGCTCGGTGCGCAGCTGCTGATCTTCATGTGGGCACCGCTGCACGGGCGCAGTCTGGAGGTATCGCTGGGCTATTTCCT
GCTGCCGCTGAGCATGATTCTCACCGGCCGCGTGGTGTATGGCGAGCACCTCTCCTACCTGCAGAAAGTCGCTGCGGTGT
TTGCCATGATCGGCGTGGGGCATGAGCTGTGGCGGCTGGGCAGTTTCTCCTGGGAGACCCTGCTGGTCGCGGGCGGCTAT
CCGCTGTACTTCGTGCTGCGTCGCAAGCTCAAGACCGATCACCTCGGCGGGCTCTGGTTCGACATGCTGCTGATGCTGCC
CATCGGCCTGTGGTTCATCGCCCACGGCCATCCGCAGGCCATTCAGCAGGCACCGCTGTTGTACCTGCTGATTCCGCTGC
TCGGGGTGATCAGTGCCTCGGCGCTGGTCAGTTACATTCTTGCCAGCCGCCTGCTGCCGTTCAGCCTGTTCGGGTTGCTC
AGTTATGTCGAGCCGATCCTGCTGGTCGGCGTCGCCCTGCTGCTGGGCGAAAGCATCAGTCGCGATGAATGGCTGACGTA
CCTGCCGATCTGGCTGGCCGTGGTGGTCCTGATGATCGAAGGCGCCAAGCATATGCTGGCCCAGCGCCGCCGGGACGCGA
GCTGA

Upstream 100 bases:

>100_bases
CGTCTGATTTGCAGCTTTTTGCACCTCAGGCCAGTAGACTGGCAAGCACGCGCACCAGACAGGTGCGTAATCTGTCGAAT
CAGCTGTTGCGGAGGCCGTT

Downstream 100 bases:

>100_bases
GCGTCAGGACTCGGTGAAACGCTCCAGCTGCATTTCCTGAAGTCGACTGAGGGTGCGCCGGAAGGCAAACGACAGGTAGC
CCTCGGTGTACAGCTCGTCC

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MYKGVVLSVLASTLFGVMYFYTSLMTPLDGEEIFGWRMLLTVPCATLFMLVSGDWQRVREVAVRLRQQPLLIFALLLSSV
LLGAQLLIFMWAPLHGRSLEVSLGYFLLPLSMILTGRVVYGEHLSYLQKVAAVFAMIGVGHELWRLGSFSWETLLVAGGY
PLYFVLRRKLKTDHLGGLWFDMLLMLPIGLWFIAHGHPQAIQQAPLLYLLIPLLGVISASALVSYILASRLLPFSLFGLL
SYVEPILLVGVALLLGESISRDEWLTYLPIWLAVVVLMIEGAKHMLAQRRRDAS

Sequences:

>Translated_294_residues
MYKGVVLSVLASTLFGVMYFYTSLMTPLDGEEIFGWRMLLTVPCATLFMLVSGDWQRVREVAVRLRQQPLLIFALLLSSV
LLGAQLLIFMWAPLHGRSLEVSLGYFLLPLSMILTGRVVYGEHLSYLQKVAAVFAMIGVGHELWRLGSFSWETLLVAGGY
PLYFVLRRKLKTDHLGGLWFDMLLMLPIGLWFIAHGHPQAIQQAPLLYLLIPLLGVISASALVSYILASRLLPFSLFGLL
SYVEPILLVGVALLLGESISRDEWLTYLPIWLAVVVLMIEGAKHMLAQRRRDAS
>Mature_294_residues
MYKGVVLSVLASTLFGVMYFYTSLMTPLDGEEIFGWRMLLTVPCATLFMLVSGDWQRVREVAVRLRQQPLLIFALLLSSV
LLGAQLLIFMWAPLHGRSLEVSLGYFLLPLSMILTGRVVYGEHLSYLQKVAAVFAMIGVGHELWRLGSFSWETLLVAGGY
PLYFVLRRKLKTDHLGGLWFDMLLMLPIGLWFIAHGHPQAIQQAPLLYLLIPLLGVISASALVSYILASRLLPFSLFGLL
SYVEPILLVGVALLLGESISRDEWLTYLPIWLAVVVLMIEGAKHMLAQRRRDAS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=28.4745762711864, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32978; Mature: 32978

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKGVVLSVLASTLFGVMYFYTSLMTPLDGEEIFGWRMLLTVPCATLFMLVSGDWQRVRE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VAVRLRQQPLLIFALLLSSVLLGAQLLIFMWAPLHGRSLEVSLGYFLLPLSMILTGRVVY
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCHHHH
GEHLSYLQKVAAVFAMIGVGHELWRLGSFSWETLLVAGGYPLYFVLRRKLKTDHLGGLWF
HHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHEEEECCCHHHHHHHHHHHHCCCCHHHH
DMLLMLPIGLWFIAHGHPQAIQQAPLLYLLIPLLGVISASALVSYILASRLLPFSLFGLL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYVEPILLVGVALLLGESISRDEWLTYLPIWLAVVVLMIEGAKHMLAQRRRDAS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYKGVVLSVLASTLFGVMYFYTSLMTPLDGEEIFGWRMLLTVPCATLFMLVSGDWQRVRE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VAVRLRQQPLLIFALLLSSVLLGAQLLIFMWAPLHGRSLEVSLGYFLLPLSMILTGRVVY
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCHHHH
GEHLSYLQKVAAVFAMIGVGHELWRLGSFSWETLLVAGGYPLYFVLRRKLKTDHLGGLWF
HHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHEEEECCCHHHHHHHHHHHHCCCCHHHH
DMLLMLPIGLWFIAHGHPQAIQQAPLLYLLIPLLGVISASALVSYILASRLLPFSLFGLL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYVEPILLVGVALLLGESISRDEWLTYLPIWLAVVVLMIEGAKHMLAQRRRDAS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]