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The map label for this gene is ycfD [H]

Identifier: 66046422

GI number: 66046422

Start: 3822877

End: 3824043

Strand: Direct

Name: ycfD [H]

Synonym: Psyr_3193

Alternate gene names: 66046422

Gene position: 3822877-3824043 (Clockwise)

Preceding gene: 66046421

Following gene: 66046423

Centisome position: 62.73

GC content: 61.35

Gene sequence:

>1167_bases
ATGAATCCTGATATTCCTCTACAACTTCTGGGCGGCATCAGTGCTCGCGTTTTCCTGCGTGACTACTGGCAGAAAAAACC
GCTGCTGATCCGCCAGGCTCTGCCGGACTTTCAAAGCCCGATCGACGCGGACGAGCTTGCCGGCCTCGCCCTGGAAGAAG
AAGTGGAGTCGCGCCTGGTCATCGAAAACGGCGAGCGTCCGTGGGAGCTGCGCCGTGGCCCGTTCGCTGAAGACGAGTTC
AGCAAACTGCCCGAGCGCGACTGGACGCTGCTGGTCCAGGCCGTGGACCAATTCGTTCCGGAGGTCAGCGAGCTGCTGGA
AAACTTCCGTTTTCTGCCCAGTTGGCGGATTGACGATGTGATGATCAGCTACGCTGCGCCTGGCGGCAGCGTCGGCCCGC
ATTTCGACAACTATGATGTGTTCCTGCTGCAGGGACACGGCAAGCGTCATTGGCAGATCGGCCAGATGTGCGATGCAGAA
AGCCCGCTGCTGCAGCATGCCGACCTGCGCATCCTTGCCGAATTCGAGAAGACCGAAGAGTGGACGCTGGAACCGGGCGA
CATGCTTTATCTGCCGCCGCGCCTGGCGCACTGCGGCGTCGCCGTCGACGACTGCCTGACCTACTCGGTCGGTTTCCGGG
CGCCAAGCGCTGCCGAAGTCCTGACTCACTTCACCGACTTCCTCAGCCAGTTCATCCCGGACGAAGAGCGCTATACCGAT
GCTGATGCCCAGCCGGTCAGCGACCCCCATCAGATCCAGCATGACGCGCTCGATCGCCTGAAAACGCTGCTGGCCGAGCA
CATGAGTGACGAACGCCTGCTGCTGACCTGGTTCGGCCAGTTCATGACCGAGCCGCGCTACCCGGAACTGGTAACCGGCC
CCGAGCTGGACGAACAGGACCTGCTCGACAGCCTCGAGCAGGGCGCGGTGCTGATTCGCAACCCGAGCGCACGGCTGGCC
TGGTCTGAAGTCGATGACGATCTGCTACTGTTTGCCAGTGGCCAGAGCCGCCTGCTGCCGGGCAGCCTGCGTGACCTGCT
CAAACTGATCTGTGCCGCCGATGCGTTGCACAGCGAAAACCTCGGCCAATGGTTGGCCGATGACGAGGGGCGCAATTTGC
TTTGCGAACTCGTAAAACAAGGAAGCCTGGGATTTGCCGATGAATAA

Upstream 100 bases:

>100_bases
TTACATCGGTAACGCAGCCGCTCAGGCCAAGCGCATCTGACACGCAAAAAAATTGCACACGCCCGGCTGTGCCGGGCGTT
TTCATTTCAAGGGCTTACAC

Downstream 100 bases:

>100_bases
AGTCACTGTAGCTGTCGCCCAATGGCAGAAGAACAACGCCGATATCCGGCGCATACGCGATTCGGTATTCATTGCCGAAC
AATCGGTGCCGCCGGAACTG

Product: transcription factor jumonji, jmjC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MNPDIPLQLLGGISARVFLRDYWQKKPLLIRQALPDFQSPIDADELAGLALEEEVESRLVIENGERPWELRRGPFAEDEF
SKLPERDWTLLVQAVDQFVPEVSELLENFRFLPSWRIDDVMISYAAPGGSVGPHFDNYDVFLLQGHGKRHWQIGQMCDAE
SPLLQHADLRILAEFEKTEEWTLEPGDMLYLPPRLAHCGVAVDDCLTYSVGFRAPSAAEVLTHFTDFLSQFIPDEERYTD
ADAQPVSDPHQIQHDALDRLKTLLAEHMSDERLLLTWFGQFMTEPRYPELVTGPELDEQDLLDSLEQGAVLIRNPSARLA
WSEVDDDLLLFASGQSRLLPGSLRDLLKLICAADALHSENLGQWLADDEGRNLLCELVKQGSLGFADE

Sequences:

>Translated_388_residues
MNPDIPLQLLGGISARVFLRDYWQKKPLLIRQALPDFQSPIDADELAGLALEEEVESRLVIENGERPWELRRGPFAEDEF
SKLPERDWTLLVQAVDQFVPEVSELLENFRFLPSWRIDDVMISYAAPGGSVGPHFDNYDVFLLQGHGKRHWQIGQMCDAE
SPLLQHADLRILAEFEKTEEWTLEPGDMLYLPPRLAHCGVAVDDCLTYSVGFRAPSAAEVLTHFTDFLSQFIPDEERYTD
ADAQPVSDPHQIQHDALDRLKTLLAEHMSDERLLLTWFGQFMTEPRYPELVTGPELDEQDLLDSLEQGAVLIRNPSARLA
WSEVDDDLLLFASGQSRLLPGSLRDLLKLICAADALHSENLGQWLADDEGRNLLCELVKQGSLGFADE
>Mature_388_residues
MNPDIPLQLLGGISARVFLRDYWQKKPLLIRQALPDFQSPIDADELAGLALEEEVESRLVIENGERPWELRRGPFAEDEF
SKLPERDWTLLVQAVDQFVPEVSELLENFRFLPSWRIDDVMISYAAPGGSVGPHFDNYDVFLLQGHGKRHWQIGQMCDAE
SPLLQHADLRILAEFEKTEEWTLEPGDMLYLPPRLAHCGVAVDDCLTYSVGFRAPSAAEVLTHFTDFLSQFIPDEERYTD
ADAQPVSDPHQIQHDALDRLKTLLAEHMSDERLLLTWFGQFMTEPRYPELVTGPELDEQDLLDSLEQGAVLIRNPSARLA
WSEVDDDLLLFASGQSRLLPGSLRDLLKLICAADALHSENLGQWLADDEGRNLLCELVKQGSLGFADE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=370, Percent_Identity=37.2972972972973, Blast_Score=245, Evalue=3e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 43959; Mature: 43959

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPDIPLQLLGGISARVFLRDYWQKKPLLIRQALPDFQSPIDADELAGLALEEEVESRLV
CCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHCCCCCHHHHHCCHHHHHHHCEEE
IENGERPWELRRGPFAEDEFSKLPERDWTLLVQAVDQFVPEVSELLENFRFLPSWRIDDV
EECCCCCHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
MISYAAPGGSVGPHFDNYDVFLLQGHGKRHWQIGQMCDAESPLLQHADLRILAEFEKTEE
EEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCHHHHHCCHHHHHHHHCCCC
WTLEPGDMLYLPPRLAHCGVAVDDCLTYSVGFRAPSAAEVLTHFTDFLSQFIPDEERYTD
CCCCCCCEEEECCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHCCC
ADAQPVSDPHQIQHDALDRLKTLLAEHMSDERLLLTWFGQFMTEPRYPELVTGPELDEQD
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCHHH
LLDSLEQGAVLIRNPSARLAWSEVDDDLLLFASGQSRLLPGSLRDLLKLICAADALHSEN
HHHHHHHCEEEEECCCCCEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
LGQWLADDEGRNLLCELVKQGSLGFADE
HHHHHCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNPDIPLQLLGGISARVFLRDYWQKKPLLIRQALPDFQSPIDADELAGLALEEEVESRLV
CCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHCCCCCHHHHHCCHHHHHHHCEEE
IENGERPWELRRGPFAEDEFSKLPERDWTLLVQAVDQFVPEVSELLENFRFLPSWRIDDV
EECCCCCHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
MISYAAPGGSVGPHFDNYDVFLLQGHGKRHWQIGQMCDAESPLLQHADLRILAEFEKTEE
EEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCHHHHHCCHHHHHHHHCCCC
WTLEPGDMLYLPPRLAHCGVAVDDCLTYSVGFRAPSAAEVLTHFTDFLSQFIPDEERYTD
CCCCCCCEEEECCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHCCC
ADAQPVSDPHQIQHDALDRLKTLLAEHMSDERLLLTWFGQFMTEPRYPELVTGPELDEQD
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCHHH
LLDSLEQGAVLIRNPSARLAWSEVDDDLLLFASGQSRLLPGSLRDLLKLICAADALHSEN
HHHHHHHCEEEEECCCCCEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
LGQWLADDEGRNLLCELVKQGSLGFADE
HHHHHCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]