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The map label for this gene is rarA [H]

Identifier: 66046406

GI number: 66046406

Start: 3803963

End: 3805285

Strand: Reverse

Name: rarA [H]

Synonym: Psyr_3177

Alternate gene names: 66046406

Gene position: 3805285-3803963 (Counterclockwise)

Preceding gene: 66046407

Following gene: 66046405

Centisome position: 62.45

GC content: 60.85

Gene sequence:

>1323_bases
ATGGATTTGTTCAGCCGCGAACCGATAGCCCAGCCTCTGGCTGCACGTTTGCGTGCTACCAACCTGGATGAATATGTCGG
TCAGGAACATGTACTTGCCCACGGCAAGCCTCTGCGTGAGGCGCTGGAGCAAGGCGCACTGCACTCGATGATTTTCTGGG
GGCCGCCCGGCGTGGGCAAGACCACCCTGGCGAAGCTGCTGGCCAAGGTGTCGGACGCGCACTTCGAGACGGTTTCGGCG
GTGCTCGCCGGGGTCAAGGAAATCCGTCAGGCAGTGGAAGTGGCCAGGCAGCAGGCCGGACAGTACGGCAAGCGCACCAT
CCTGTTCGTTGACGAAGTGCACCGCTTCAACAAGTCACAGCAGGACGCCTTCCTGCCTTACGTCGAGGACGGTACGCTGA
TCTTTATCGGCGCGACCACCGAAAACCCCTCGTTCGAACTCAACAACGCCTTGTTGTCCCGGGCGCGTGTCTACGTGCTC
AAAAGCCTGGACGAAGCGGCGCTGCGCAAGCTGGTCAATCGTGCCCTGACCGAAGAGCGCGGGCTGGGCAAGCGGCAACT
GACCCTGAGCGATGAGGGGTTTGCGATTCTGATGTCTGCCGCCGATGGCGACGGTCGGCGCATGCTCAACCTGCTGGAGA
ACGCTTCGGATCTGGCCGAAGACGGCAGCGAAATCGACGTCGGGCTGCTGCAAAGCCTGTTGGGTGACAGTCGACGCCGC
TTCGACAAGGGCGGCGAGGCGTTCTATGACCAGATATCGGCCTTGCACAAGTCGATTCGCGGTTCAAATCCCGATGCGGC
GCTGTACTGGTTTGCGCGGATGATCGACGGCGGCTGTGATCCACTGTATCTGGCGCGCCGCGTGGTGCGCATGGCCAGTG
AAGATATCGGCAATGCCGATCCTCGTGCGCTGCCCTTGTGCATGTCCGCCTGGGATGTACAGGAACGCCTTGGCAGCCCC
GAGGGCGAGCTGGCGGTCGCACAGGCCATTGTCTATCTCGCCTGTGCGCCGAAAAGCAACGCGGTCTACATGGCGTTCAA
GGCGGCCATGCGTGAAGCGGGTGAGCACGGTTCGCTGGAGGTTCCGCTGCACTTGCGCAATGCGCCTACCAAGCTGATGA
AGCAGCTCGGTTATGGCGAAGAATATCGCTATGCCCATGATGAGCCTGATGCTTACGCAGCTGGCGAAGACTACTTTCCA
GATGAGCTGGAGCCACGGCAGTATTACCAGCCTGTGCCTCGCGGTCTGGAGCTCAAGATCGGTGAAAAGCTCAGGCATCT
GAACGCATTGGACGATGCCAGCCCTCGCAAGCGGAGAAAGTGA

Upstream 100 bases:

>100_bases
CGGGGTCAAGGCCAACGAGTCGATCGCAGCCAGCAAGTTTCAGTTCCAGATTCCCAAGGGCGCTGATGTCATTCAAGAGT
AAAAGGGCCGATTTCTGACC

Downstream 100 bases:

>100_bases
TGATTCAGACTATTCTTGCGGTGTCGATTGCCGGGATCGCTGGTACATTATTGCGCTTTGCGACAGGCACCTGGGTCAGC
GCCAACTGGCCACGTTATTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MDLFSREPIAQPLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSA
VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVL
KSLDEAALRKLVNRALTEERGLGKRQLTLSDEGFAILMSAADGDGRRMLNLLENASDLAEDGSEIDVGLLQSLLGDSRRR
FDKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSP
EGELAVAQAIVYLACAPKSNAVYMAFKAAMREAGEHGSLEVPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFP
DELEPRQYYQPVPRGLELKIGEKLRHLNALDDASPRKRRK

Sequences:

>Translated_440_residues
MDLFSREPIAQPLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSA
VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVL
KSLDEAALRKLVNRALTEERGLGKRQLTLSDEGFAILMSAADGDGRRMLNLLENASDLAEDGSEIDVGLLQSLLGDSRRR
FDKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSP
EGELAVAQAIVYLACAPKSNAVYMAFKAAMREAGEHGSLEVPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFP
DELEPRQYYQPVPRGLELKIGEKLRHLNALDDASPRKRRK
>Mature_440_residues
MDLFSREPIAQPLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSA
VLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVL
KSLDEAALRKLVNRALTEERGLGKRQLTLSDEGFAILMSAADGDGRRMLNLLENASDLAEDGSEIDVGLLQSLLGDSRRR
FDKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSP
EGELAVAQAIVYLACAPKSNAVYMAFKAAMREAGEHGSLEVPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFP
DELEPRQYYQPVPRGLELKIGEKLRHLNALDDASPRKRRK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=443, Percent_Identity=41.5349887133183, Blast_Score=311, Evalue=7e-85,
Organism=Homo sapiens, GI18426904, Length=443, Percent_Identity=37.4717832957111, Blast_Score=256, Evalue=2e-68,
Organism=Escherichia coli, GI1787119, Length=433, Percent_Identity=61.2009237875289, Blast_Score=523, Evalue=1e-149,
Organism=Saccharomyces cerevisiae, GI6324111, Length=427, Percent_Identity=42.1545667447307, Blast_Score=314, Evalue=2e-86,
Organism=Saccharomyces cerevisiae, GI6324039, Length=213, Percent_Identity=25.3521126760563, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48794; Mature: 48794

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFSREPIAQPLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGK
CCCCCCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCHHHHHHHHCCCHHCEEEECCCCCCH
TTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCC
QDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTEER
CCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGKRQLTLSDEGFAILMSAADGDGRRMLNLLENASDLAEDGSEIDVGLLQSLLGDSRRR
CCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
FDKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPLYLARRVVRMASEDIGNAD
HCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAVYMAFKAAMREAGEHGSLE
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCCCEE
VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFPDELEPRQYYQPVPRGLELKI
EEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEHH
GEKLRHLNALDDASPRKRRK
HHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure
MDLFSREPIAQPLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGK
CCCCCCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCHHHHHHHHCCCHHCEEEECCCCCCH
TTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCC
QDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTEER
CCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGKRQLTLSDEGFAILMSAADGDGRRMLNLLENASDLAEDGSEIDVGLLQSLLGDSRRR
CCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
FDKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPLYLARRVVRMASEDIGNAD
HCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAVYMAFKAAMREAGEHGSLE
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCCCEE
VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFPDELEPRQYYQPVPRGLELKI
EEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEHH
GEKLRHLNALDDASPRKRRK
HHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]