Click here to switch to the map view.

The map label for this gene is ydcP [H]

Identifier: 66046326

GI number: 66046326

Start: 3712562

End: 3714568

Strand: Direct

Name: ydcP [H]

Synonym: Psyr_3097

Alternate gene names: 66046326

Gene position: 3712562-3714568 (Clockwise)

Preceding gene: 66046325

Following gene: 66046328

Centisome position: 60.92

GC content: 61.24

Gene sequence:

>2007_bases
ATGTCGTTACCCAAGCACCACCTGGAATTGCTCAGCCCTGCACGGGATGTGACCATCGCCCGTGAAGCCATCCTGCATGG
TGCCGATGCGGTCTATATCGGCGGGCCGAGCTTTGGTGCGCGGCACAACGCCTGCAACGAGGTCAGTGACATTGCCGAGC
TGGTCAAATTCGCGCACCGCTATCACGCGCGGATCTTCACCACCATCAACACCATCCTCCATGACGACGAACTGGAGCCT
GCGCGCAAGCTGATTCACCAGCTCTACGACGCCGGCGTGGACGCGTTGATCGTGCAGGACCTCGGGGTGATGGAGATGGA
CATTCCGCCCATCGAACTGCACGCCAGTACGCAAACCGATATTCGCACCCTGAGCCGGGCGAAGTTTCTCGATCAGGCCG
GTTTCTCGCAACTGGTGCTGGCCCGGGAACTGAACCTTCAGGAAATCCGCGCAATCGCCGACGAAACCGACGCGGCCATC
GAATTCTTCATCCACGGCGCGCTGTGTGTGGCGTTCTCCGGGCAGTGCAATATTTCCCACGCGCAAAACGGCCGCAGCGC
CAACCGTGGCGACTGCTCGCAGGCCTGCCGCCTGCCGTACACGCTAAAGGATGATCAGGGTCGCGTTGTAGCCTTCGAGA
AGCATCTGTTGTCCATGAAAGACAACAACCAGAGCGCCAACCTGCGTGCGCTGGTGGACGCCGGCGTGCGCTCGTTCAAG
ATCGAAGGCCGTTACAAGGATGCGGGCTACGTGAAAAACATCACGGCCTATTATCGCCAGCGTCTGGACGAGATTCTCGA
AGACCGCACGGACCTCGCACCTGCTTCCAGCGGCCGTACCGCGCACTTTTTCGTGCCGGACCCGGAAAAGACCTTTCATC
GCGGCAGCACCGATTATTTCGTCAGCGACCGCAAGATCGACATCGGCGCGTTCGATACGCCGACCTTCACCGGTCTGGCG
GTGGGCACCGTTGAAAAGCTCGGCAAGCGCGACCTGATAGCCGTGACCCATGAGCCGCTGTCCAACGGCGATGGCCTCAA
TGTGCAGATCAAGCGTGAAGTAGTGGGCTTCCGTGCCAACATCGCCGAGCTCAAGGGCGAGTTCGAAGAGGACGGCCAGA
AGCGCTGGCGCTATCGCGTAGAGCCCAACGAGATGCCCGCGGGCCTTTCCGGCCTACGCCCTAATCATCCGCTGAACCGC
AACCTGGACCACAACTGGCAACAGGCGCTGCTCAAGACCTCGGCCGAGCGCCGTATCGGCGTTCAGTGGCAGGTCACGCT
GCGCGAAGATCATTTGAGCCTGAGAGCCACTAGCGAAGAAAGCGTGAGCGTCACCGTCGGCCTCGATGGGCCATTCGGTG
CGGCCAACAAGCCCGAGCAGGCGCTGGATCAGTTGCGTGACCTGCTCACTCAACTGGGCACCACGATCTATCATGCCCAG
GATGTCAGGCTTGACGCGCCACAGGCGTTCTTCGTACCCAACTCGCAGCTCAAGACCCTGCGCCGCGACGCCATCGAGGC
GCTGACCGAAGCCCGTATCAAGGCTCACCCACGTGGTGGCCGCAAGGCCGAGACCACCCCGCCACCGGTGTACCCGGAGT
CGCATCTGTCTTTTCTGGCCAACGTCTACAACCAGAAGGCCCGCGACTTCTATCATCGCCACGGCGTACAGCTGATCGAC
GCGGCCTACGAGGCCCACGAAGAGACCGGCGAAGTACCGGTGATGATCACCAAGCATTGCCTGCGCTTCTCGTTCAACCT
GTGCCCGAAACAGGCCAAAGGTGTGACAGGCGTGCGCACCAAGGTCGCGCCGATGCAACTGGTGCACGGTGATGAAGTGC
TGACCCTCAAGTTCGATTGCAAGCCTTGCGAAATGCACGTGATCGGCAAGATGAAAGGTCACATTCTCGACTTGCCGCTC
CCCGGCAGCGCGGCGGCCAAATCGGTGGTCGGCCACATCACCCCGGAAGACCTGCTCAAGACTGCGCGCCAGCGTTCTCC
GCACTGA

Upstream 100 bases:

>100_bases
GCCGATGGTCAGTCCGGCACCTGCTGCAATCTGCAACAGGTGCACCGCGCGGTCTCTGCCACTACAATGCGCGCTTTGCC
CGCAGCCGGATCCCGTTGCC

Downstream 100 bases:

>100_bases
TCGGCACAAGGGGGTTGGTGCCCTGCCAGCCCCTTTCTGTCTTCTGATAAAGCCCTCTTAAAGAGCGCGCTCCATATGAG
TGGTGTTCCACACCGGATCG

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 667

Protein sequence:

>668_residues
MSLPKHHLELLSPARDVTIAREAILHGADAVYIGGPSFGARHNACNEVSDIAELVKFAHRYHARIFTTINTILHDDELEP
ARKLIHQLYDAGVDALIVQDLGVMEMDIPPIELHASTQTDIRTLSRAKFLDQAGFSQLVLARELNLQEIRAIADETDAAI
EFFIHGALCVAFSGQCNISHAQNGRSANRGDCSQACRLPYTLKDDQGRVVAFEKHLLSMKDNNQSANLRALVDAGVRSFK
IEGRYKDAGYVKNITAYYRQRLDEILEDRTDLAPASSGRTAHFFVPDPEKTFHRGSTDYFVSDRKIDIGAFDTPTFTGLA
VGTVEKLGKRDLIAVTHEPLSNGDGLNVQIKREVVGFRANIAELKGEFEEDGQKRWRYRVEPNEMPAGLSGLRPNHPLNR
NLDHNWQQALLKTSAERRIGVQWQVTLREDHLSLRATSEESVSVTVGLDGPFGAANKPEQALDQLRDLLTQLGTTIYHAQ
DVRLDAPQAFFVPNSQLKTLRRDAIEALTEARIKAHPRGGRKAETTPPPVYPESHLSFLANVYNQKARDFYHRHGVQLID
AAYEAHEETGEVPVMITKHCLRFSFNLCPKQAKGVTGVRTKVAPMQLVHGDEVLTLKFDCKPCEMHVIGKMKGHILDLPL
PGSAAAKSVVGHITPEDLLKTARQRSPH

Sequences:

>Translated_668_residues
MSLPKHHLELLSPARDVTIAREAILHGADAVYIGGPSFGARHNACNEVSDIAELVKFAHRYHARIFTTINTILHDDELEP
ARKLIHQLYDAGVDALIVQDLGVMEMDIPPIELHASTQTDIRTLSRAKFLDQAGFSQLVLARELNLQEIRAIADETDAAI
EFFIHGALCVAFSGQCNISHAQNGRSANRGDCSQACRLPYTLKDDQGRVVAFEKHLLSMKDNNQSANLRALVDAGVRSFK
IEGRYKDAGYVKNITAYYRQRLDEILEDRTDLAPASSGRTAHFFVPDPEKTFHRGSTDYFVSDRKIDIGAFDTPTFTGLA
VGTVEKLGKRDLIAVTHEPLSNGDGLNVQIKREVVGFRANIAELKGEFEEDGQKRWRYRVEPNEMPAGLSGLRPNHPLNR
NLDHNWQQALLKTSAERRIGVQWQVTLREDHLSLRATSEESVSVTVGLDGPFGAANKPEQALDQLRDLLTQLGTTIYHAQ
DVRLDAPQAFFVPNSQLKTLRRDAIEALTEARIKAHPRGGRKAETTPPPVYPESHLSFLANVYNQKARDFYHRHGVQLID
AAYEAHEETGEVPVMITKHCLRFSFNLCPKQAKGVTGVRTKVAPMQLVHGDEVLTLKFDCKPCEMHVIGKMKGHILDLPL
PGSAAAKSVVGHITPEDLLKTARQRSPH
>Mature_667_residues
SLPKHHLELLSPARDVTIAREAILHGADAVYIGGPSFGARHNACNEVSDIAELVKFAHRYHARIFTTINTILHDDELEPA
RKLIHQLYDAGVDALIVQDLGVMEMDIPPIELHASTQTDIRTLSRAKFLDQAGFSQLVLARELNLQEIRAIADETDAAIE
FFIHGALCVAFSGQCNISHAQNGRSANRGDCSQACRLPYTLKDDQGRVVAFEKHLLSMKDNNQSANLRALVDAGVRSFKI
EGRYKDAGYVKNITAYYRQRLDEILEDRTDLAPASSGRTAHFFVPDPEKTFHRGSTDYFVSDRKIDIGAFDTPTFTGLAV
GTVEKLGKRDLIAVTHEPLSNGDGLNVQIKREVVGFRANIAELKGEFEEDGQKRWRYRVEPNEMPAGLSGLRPNHPLNRN
LDHNWQQALLKTSAERRIGVQWQVTLREDHLSLRATSEESVSVTVGLDGPFGAANKPEQALDQLRDLLTQLGTTIYHAQD
VRLDAPQAFFVPNSQLKTLRRDAIEALTEARIKAHPRGGRKAETTPPPVYPESHLSFLANVYNQKARDFYHRHGVQLIDA
AYEAHEETGEVPVMITKHCLRFSFNLCPKQAKGVTGVRTKVAPMQLVHGDEVLTLKFDCKPCEMHVIGKMKGHILDLPLP
GSAAAKSVVGHITPEDLLKTARQRSPH

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=666, Percent_Identity=69.5195195195195, Blast_Score=949, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=411, Percent_Identity=28.7104622871046, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1789548, Length=308, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 74368; Mature: 74237

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPKHHLELLSPARDVTIAREAILHGADAVYIGGPSFGARHNACNEVSDIAELVKFAHR
CCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YHARIFTTINTILHDDELEPARKLIHQLYDAGVDALIVQDLGVMEMDIPPIELHASTQTD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCHHH
IRTLSRAKFLDQAGFSQLVLARELNLQEIRAIADETDAAIEFFIHGALCVAFSGQCNISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHEEEEEECCCCCCCC
AQNGRSANRGDCSQACRLPYTLKDDQGRVVAFEKHLLSMKDNNQSANLRALVDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEEHHHHHHCCCCCCCCHHHHHHCCCEEEE
IEGRYKDAGYVKNITAYYRQRLDEILEDRTDLAPASSGRTAHFFVPDPEKTFHRGSTDYF
ECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCCCCEE
VSDRKIDIGAFDTPTFTGLAVGTVEKLGKRDLIAVTHEPLSNGDGLNVQIKREVVGFRAN
EECCEEEECCCCCCCCCCEEHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHHH
IAELKGEFEEDGQKRWRYRVEPNEMPAGLSGLRPNHPLNRNLDHNWQQALLKTSAERRIG
HHHHCCCHHHCCHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
VQWQVTLREDHLSLRATSEESVSVTVGLDGPFGAANKPEQALDQLRDLLTQLGTTIYHAQ
CEEEEEEEECCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCHHEEEEC
DVRLDAPQAFFVPNSQLKTLRRDAIEALTEARIKAHPRGGRKAETTPPPVYPESHLSFLA
CCEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
NVYNQKARDFYHRHGVQLIDAAYEAHEETGEVPVMITKHCLRFSFNLCPKQAKGVTGVRT
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHH
KVAPMQLVHGDEVLTLKFDCKPCEMHVIGKMKGHILDLPLPGSAAAKSVVGHITPEDLLK
CCCCEEEECCCEEEEEEECCCCCCEEEEECCCCCEEECCCCCCHHHHHHHCCCCHHHHHH
TARQRSPH
HHHHCCCC
>Mature Secondary Structure 
SLPKHHLELLSPARDVTIAREAILHGADAVYIGGPSFGARHNACNEVSDIAELVKFAHR
CCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YHARIFTTINTILHDDELEPARKLIHQLYDAGVDALIVQDLGVMEMDIPPIELHASTQTD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCHHH
IRTLSRAKFLDQAGFSQLVLARELNLQEIRAIADETDAAIEFFIHGALCVAFSGQCNISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHEEEEEECCCCCCCC
AQNGRSANRGDCSQACRLPYTLKDDQGRVVAFEKHLLSMKDNNQSANLRALVDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEEHHHHHHCCCCCCCCHHHHHHCCCEEEE
IEGRYKDAGYVKNITAYYRQRLDEILEDRTDLAPASSGRTAHFFVPDPEKTFHRGSTDYF
ECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCCCCEE
VSDRKIDIGAFDTPTFTGLAVGTVEKLGKRDLIAVTHEPLSNGDGLNVQIKREVVGFRAN
EECCEEEECCCCCCCCCCEEHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHHH
IAELKGEFEEDGQKRWRYRVEPNEMPAGLSGLRPNHPLNRNLDHNWQQALLKTSAERRIG
HHHHCCCHHHCCHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
VQWQVTLREDHLSLRATSEESVSVTVGLDGPFGAANKPEQALDQLRDLLTQLGTTIYHAQ
CEEEEEEEECCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCHHEEEEC
DVRLDAPQAFFVPNSQLKTLRRDAIEALTEARIKAHPRGGRKAETTPPPVYPESHLSFLA
CCEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
NVYNQKARDFYHRHGVQLIDAAYEAHEETGEVPVMITKHCLRFSFNLCPKQAKGVTGVRT
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHH
KVAPMQLVHGDEVLTLKFDCKPCEMHVIGKMKGHILDLPLPGSAAAKSVVGHITPEDLLK
CCCCEEEECCCEEEEEEECCCCCCEEEEECCCCCEEECCCCCCHHHHHHHCCCCHHHHHH
TARQRSPH
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]