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The map label for this gene is yvrB [H]

Identifier: 66046324

GI number: 66046324

Start: 3710645

End: 3711667

Strand: Direct

Name: yvrB [H]

Synonym: Psyr_3095

Alternate gene names: 66046324

Gene position: 3710645-3711667 (Clockwise)

Preceding gene: 66046323

Following gene: 66046325

Centisome position: 60.89

GC content: 63.93

Gene sequence:

>1023_bases
ATGAGATTGCCGATAGCATTGAGTCATGTGCTCTGGGTTTCGGCCGTGCTGGTGCTGGCGATCATGATCGGGGCCGCGAT
CGGCGAAACCTCGATCAGCCTGCAGGTGGTTTTTCAGGTGCTGGCCAACAAACTCTGGGCCGCCAGCTATGTGCTCGACC
CTATAGACGAAGGCATCGTCTGGAACTACCGGCTGACCCGCGCCATTGTCGCAGCCGCCTGCGGGGCCGGGCTGGCGATC
TGTGGCGTGGTGTTGCAGTCGTTATTGCGCAACCCGCTGGCAGACCCGTATCTGCTGGGGATTTCCGCAGGGGCCTCGAC
CGGCGCGGTACTGGTCGCCATTCTGGGCTTCGGTGCAGGCGCGATCTCGATGTCGGCAGGCGCCTTTGTCGGTGCCGTGG
CGGCATTTTCGCTGGTCGCCCTGCTGGCGCACTCTTCACGCGGCACCACGGCAGCCGGGCAGATCATTCTGGCCGGGATC
GCCGGTTCGCAACTGTTCAATGCCCTGACCTCGTTTCTGATCACCAAATCGGCAAGCTCCGAGCAGGCACGCGGCATCAT
GTTCTGGCTGCTGGGTAACCTCAGCGGCGTGCGCTGGCACTCGGTCTGGCTGGCAGTGCCGACAGTGCTGGTCGGTCTGC
TGGTGTGCCTCTGGCACCGGCGAGCGCTGGACGCGTTCACCTTCGGCAGCGACTCGGCGGCGTCACTGGGGATCGCGGTA
CGCCGCGTGCAGATCATATTGATCACTACCGCCGCGCTGGTCACCGCAGTGATGGTCTCGATTGTCGGCTCCATCGGTTT
TGTCGGGCTGGTGATCCCGCACGCGGTACGCATGCTGGTCGGTGTCCGGCATGCTCGGCTGGTGCCGCTGAGTGCCTTGA
GCGGCGCACTGTTCCTGATCGCTGCCGATATCCTCTCGCGCACGCTGATCAAGGGGCAGGCGCTGCCGATCGGGGTGATT
ACCGCACTGATCGGCGCACCGGTCTTCGCTTTGATTCTTACCCGGGGCAACAGCACGCGATGA

Upstream 100 bases:

>100_bases
GGATCGTGATCATCGACGCCGAGGGCATGCAGGCTGGCCTGCGTCTGTTCACCGGGTTCGAGGAACTGGCTGACGCCGCC
AACCGTTTCAACGCTGCCAA

Downstream 100 bases:

>100_bases
ACGCCTTACCCCATTCGCTCAATGCACCGGTGCTCGGTTGTGCCGGTCTGGGTTATTCGGTACGTGGCGCAGCGCTGCTG
CGCGATGTCGACCTGAGCAT

Product: transport system permease protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MRLPIALSHVLWVSAVLVLAIMIGAAIGETSISLQVVFQVLANKLWAASYVLDPIDEGIVWNYRLTRAIVAAACGAGLAI
CGVVLQSLLRNPLADPYLLGISAGASTGAVLVAILGFGAGAISMSAGAFVGAVAAFSLVALLAHSSRGTTAAGQIILAGI
AGSQLFNALTSFLITKSASSEQARGIMFWLLGNLSGVRWHSVWLAVPTVLVGLLVCLWHRRALDAFTFGSDSAASLGIAV
RRVQIILITTAALVTAVMVSIVGSIGFVGLVIPHAVRMLVGVRHARLVPLSALSGALFLIAADILSRTLIKGQALPIGVI
TALIGAPVFALILTRGNSTR

Sequences:

>Translated_340_residues
MRLPIALSHVLWVSAVLVLAIMIGAAIGETSISLQVVFQVLANKLWAASYVLDPIDEGIVWNYRLTRAIVAAACGAGLAI
CGVVLQSLLRNPLADPYLLGISAGASTGAVLVAILGFGAGAISMSAGAFVGAVAAFSLVALLAHSSRGTTAAGQIILAGI
AGSQLFNALTSFLITKSASSEQARGIMFWLLGNLSGVRWHSVWLAVPTVLVGLLVCLWHRRALDAFTFGSDSAASLGIAV
RRVQIILITTAALVTAVMVSIVGSIGFVGLVIPHAVRMLVGVRHARLVPLSALSGALFLIAADILSRTLIKGQALPIGVI
TALIGAPVFALILTRGNSTR
>Mature_340_residues
MRLPIALSHVLWVSAVLVLAIMIGAAIGETSISLQVVFQVLANKLWAASYVLDPIDEGIVWNYRLTRAIVAAACGAGLAI
CGVVLQSLLRNPLADPYLLGISAGASTGAVLVAILGFGAGAISMSAGAFVGAVAAFSLVALLAHSSRGTTAAGQIILAGI
AGSQLFNALTSFLITKSASSEQARGIMFWLLGNLSGVRWHSVWLAVPTVLVGLLVCLWHRRALDAFTFGSDSAASLGIAV
RRVQIILITTAALVTAVMVSIVGSIGFVGLVIPHAVRMLVGVRHARLVPLSALSGALFLIAADILSRTLIKGQALPIGVI
TALIGAPVFALILTRGNSTR

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=274, Percent_Identity=36.4963503649635, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788004, Length=282, Percent_Identity=36.1702127659575, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1790741, Length=282, Percent_Identity=34.7517730496454, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1786805, Length=310, Percent_Identity=34.1935483870968, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1786804, Length=282, Percent_Identity=30.1418439716312, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786347, Length=291, Percent_Identity=30.2405498281787, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 35009; Mature: 35009

Theoretical pI: Translated: 11.52; Mature: 11.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPIALSHVLWVSAVLVLAIMIGAAIGETSISLQVVFQVLANKLWAASYVLDPIDEGIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
WNYRLTRAIVAAACGAGLAICGVVLQSLLRNPLADPYLLGISAGASTGAVLVAILGFGAG
EHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCC
AISMSAGAFVGAVAAFSLVALLAHSSRGTTAAGQIILAGIAGSQLFNALTSFLITKSASS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCEEEEECHHHHHHHHHHHHHHHCCCCC
EQARGIMFWLLGNLSGVRWHSVWLAVPTVLVGLLVCLWHRRALDAFTFGSDSAASLGIAV
HHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RRVQIILITTAALVTAVMVSIVGSIGFVGLVIPHAVRMLVGVRHARLVPLSALSGALFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AADILSRTLIKGQALPIGVITALIGAPVFALILTRGNSTR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRLPIALSHVLWVSAVLVLAIMIGAAIGETSISLQVVFQVLANKLWAASYVLDPIDEGIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
WNYRLTRAIVAAACGAGLAICGVVLQSLLRNPLADPYLLGISAGASTGAVLVAILGFGAG
EHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCC
AISMSAGAFVGAVAAFSLVALLAHSSRGTTAAGQIILAGIAGSQLFNALTSFLITKSASS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCEEEEECHHHHHHHHHHHHHHHCCCCC
EQARGIMFWLLGNLSGVRWHSVWLAVPTVLVGLLVCLWHRRALDAFTFGSDSAASLGIAV
HHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RRVQIILITTAALVTAVMVSIVGSIGFVGLVIPHAVRMLVGVRHARLVPLSALSGALFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AADILSRTLIKGQALPIGVITALIGAPVFALILTRGNSTR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]