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The map label for this gene is ycaN [H]

Identifier: 66046282

GI number: 66046282

Start: 3648766

End: 3649662

Strand: Direct

Name: ycaN [H]

Synonym: Psyr_3051

Alternate gene names: 66046282

Gene position: 3648766-3649662 (Clockwise)

Preceding gene: 66046280

Following gene: 66046291

Centisome position: 59.88

GC content: 63.88

Gene sequence:

>897_bases
ATGACTACCGATATTCAGGACCTGCTGGCCTTCGTCGCCGTGGTCAATGCCAGAGGCTTTCGCGAGGCAGCGCGGCTCAG
CGGCAAATCCGCCTCCAGCCTCAGCGACGCCATTCGCCGCATGGAGGCGCGGCTTGGGGTGCGGCTGCTGAATCGCACCA
CTCGCAGCGTGGCTCCGACAGAGGCTGGCGCCAGGCTTATGGAGCGTATTGTGCCCGCACTGGGCGAAGTGGAGTCGGCC
CTGGATGTGGTCAATGACTTTCGCGATCGCCCGTCAGGCACTCTGAGGCTGAACGTTCCGGTCAGCGCCGCCAGGCTGGT
GCTGCCCTCGATCATCACACCGTTCCTGCAGACCTACCCCGACATCCGCCTGGAGGTGGTCACCGAAGAAAGCTTCGTCG
ACATGCTTGCAGCCGGATGCGATGCCGGCATTCGCTACGACGAACGCCTGGAGCAGGACATGATCGCGGTGCCCATAGGC
CCGAGGTTCCAGCGTTTTGCGACGGCTGCGTCACCGGCCTATCTGCAGGCCAGAGGACGCCCCGAGCACCCGCGAGATCT
GCTCGCGCATGCCTGTCTGCGAGGAAAATTCCCCAGCGGGGTCATACCGCTGTGGGAATACGAGCGGGACGGCGATACCG
TCAAGGTTGACCCCACAGGCCCTCTCACCGTCAGGATAGGCGGAGCGTTCGATCTGACTGTGCAGGCCGCCATCGACGGG
CTGGGCGTTGTTCATCTGTTCGAGGACTGGCTACGCCCTCACCTGGACAGCGGCGCACTGGAACCGATACTCGAACCCTG
GTGGCAGCGCTTCACCGGGCCGTATCTGTACTACCCGGGGCGCCGCTACCTGCCCTCGCCGCTGAGGGCTTTCATCGACT
TTATCAATACGCGCTGA

Upstream 100 bases:

>100_bases
TTCCTCACTATAGGCACTGAGCACTGTATTGATAATCATGCGTAATCGGCACAACCTGTACGCCTGAGCGAACACTGAAC
AGAGCAACCGGGCCACGACA

Downstream 100 bases:

>100_bases
GCCGCAGGCGGCATCAGCTCATCGCCACAACCGGACCCACGCCGCGCCGCGCTGGCGCGGCCATGGCGAACAACTCGTCG
ACGCGTCTGACTTCATCCGC

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTTDIQDLLAFVAVVNARGFREAARLSGKSASSLSDAIRRMEARLGVRLLNRTTRSVAPTEAGARLMERIVPALGEVESA
LDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYPDIRLEVVTEESFVDMLAAGCDAGIRYDERLEQDMIAVPIG
PRFQRFATAASPAYLQARGRPEHPRDLLAHACLRGKFPSGVIPLWEYERDGDTVKVDPTGPLTVRIGGAFDLTVQAAIDG
LGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFINTR

Sequences:

>Translated_298_residues
MTTDIQDLLAFVAVVNARGFREAARLSGKSASSLSDAIRRMEARLGVRLLNRTTRSVAPTEAGARLMERIVPALGEVESA
LDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYPDIRLEVVTEESFVDMLAAGCDAGIRYDERLEQDMIAVPIG
PRFQRFATAASPAYLQARGRPEHPRDLLAHACLRGKFPSGVIPLWEYERDGDTVKVDPTGPLTVRIGGAFDLTVQAAIDG
LGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFINTR
>Mature_297_residues
TTDIQDLLAFVAVVNARGFREAARLSGKSASSLSDAIRRMEARLGVRLLNRTTRSVAPTEAGARLMERIVPALGEVESAL
DVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYPDIRLEVVTEESFVDMLAAGCDAGIRYDERLEQDMIAVPIGP
RFQRFATAASPAYLQARGRPEHPRDLLAHACLRGKFPSGVIPLWEYERDGDTVKVDPTGPLTVRIGGAFDLTVQAAIDGL
GVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFINTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=39.7306397306397, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=37.6712328767123, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=28.5234899328859, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=26.8041237113402, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=27.6450511945392, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=29.4520547945205, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=28.7625418060201, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1786448, Length=286, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790399, Length=140, Percent_Identity=35, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI145693105, Length=151, Percent_Identity=27.8145695364238, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788748, Length=124, Percent_Identity=32.258064516129, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33123; Mature: 32992

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDIQDLLAFVAVVNARGFREAARLSGKSASSLSDAIRRMEARLGVRLLNRTTRSVAPT
CCCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EAGARLMERIVPALGEVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC
DIRLEVVTEESFVDMLAAGCDAGIRYDERLEQDMIAVPIGPRFQRFATAASPAYLQARGR
CCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHCEEEECCCCHHHHHHHHCCCHHEECCCC
PEHPRDLLAHACLRGKFPSGVIPLWEYERDGDTVKVDPTGPLTVRIGGAFDLTVQAAIDG
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEECCCEEHHHHHHHCC
LGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFINTR
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TTDIQDLLAFVAVVNARGFREAARLSGKSASSLSDAIRRMEARLGVRLLNRTTRSVAPT
CCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EAGARLMERIVPALGEVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC
DIRLEVVTEESFVDMLAAGCDAGIRYDERLEQDMIAVPIGPRFQRFATAASPAYLQARGR
CCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHCEEEECCCCHHHHHHHHCCCHHEECCCC
PEHPRDLLAHACLRGKFPSGVIPLWEYERDGDTVKVDPTGPLTVRIGGAFDLTVQAAIDG
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEECCCEEHHHHHHHCC
LGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFINTR
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]