| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is 66046255
Identifier: 66046255
GI number: 66046255
Start: 3621563
End: 3622699
Strand: Direct
Name: 66046255
Synonym: Psyr_3024
Alternate gene names: NA
Gene position: 3621563-3622699 (Clockwise)
Preceding gene: 66046254
Following gene: 66046257
Centisome position: 59.43
GC content: 59.81
Gene sequence:
>1137_bases TTGACTCTCACTATCGGTTCAGATTTCGACAGCGGCAACATTCAGGTTCTCGACGCAAGCGACCCGGCGCATATCAGACT GGCGATTCGGCCCGACACGCAAAGCGCGCATTTCCAGTGGTTTCATTTCAAGGCAGACGGCCTGAACGTCGGCCAGACCT ACGGCTTCAGCCTCACCAATGCCAGCCAATCCACTTTCAACAGTGCCTGGAGCGGCTACAACGCCGTGGCGTCCTACGAC CATCAGAACTGGTTTCGTGTCGCGTCGGATTTCGACGGCAAGGCGCTGAATTTCAGCCTGGCCGCGGAGCAACCGCAGGT CTGGTTTGCGTACTTCGAACCCTACAGCCGTGAACGCCATGACTGGCTGATCGAACAGGCGCAGGAAAAAGCCGGTACAC AGTTGCTGGCTGTCGGCAAAAGCGTCGAGGGCCGGGATATTCAGCTGCTGCGCAAAGGTGACGGTGCCGAAGGCAAACGC AAGATCTGGATGATTGCCCAGCAGCACCCTGGCGAACACATGGCCGAATGGTTCATGGAGGGCGTGATCGAACGCCTCCA GCAAAAGGATGACGCCGCGCTGCAGCAATTGCTGGCCGAGGCAGACCTGTACCTGGTGCCGAACGTCAACCCGGACGGGG CCTTTCATGGCCACTTGCGCACCAACGCCAGCGGCAAGGACCTTAACCGTGCCTGGCAGGACAGTACCGAAGCGCTGAGC CCGGAAGTGTCCTTCGTCAGGCAGCAGATGGAAAAATACGGCGTGGACATGTTCCTCGACGTGCACGGTGACGAGGAAAT CCCCTACGTATTCACCGCCGCCTGCGAAGGCAATCCGGGGTATACCGCACAGCAACGCCAGCTTGAAGAGCGCTTTCGCA GCCGCCTGTGCGAGGTCAGCGACAACTTCCAGACGGCTCATGGCTACCCACGCGGCGCACCCGGTCAGGCCAACATGAAC CTGGCCGCCAATGCTGTGGGCGAACGCTACAAGTGCCTGTCACTGACCCTGGAAATGCCCTTCAAGGATCACGACAACGC GCCAGACCCAGTCACCGGCTGGTCAGGCAAGCGTTCCGCGCAACTGGCCGGGGACATACTGACCGTGCTGTCCGAGATGG TAAAAGAGCTGCGTTAA
Upstream 100 bases:
>100_bases CGCGCAGATGACCGTTGCAGTGAAGTTTACGTCGCAGGACGCGATGTCGATCGGTGTACAGTAGCGGCCTGAAAAGGCAT CTACGCAGCAGGCACCTATC
Downstream 100 bases:
>100_bases GGGCTCTGCTGTCTTCAGGCAAACCGAAATGCCCATCTACGCGTGGGCATTTTTGTTTGCGCTGGCCGCACGGCGTACGA TCAGACTGGCCAGCGCGATC
Product: peptidase M14, carboxypeptidase A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MTLTIGSDFDSGNIQVLDASDPAHIRLAIRPDTQSAHFQWFHFKADGLNVGQTYGFSLTNASQSTFNSAWSGYNAVASYD HQNWFRVASDFDGKALNFSLAAEQPQVWFAYFEPYSRERHDWLIEQAQEKAGTQLLAVGKSVEGRDIQLLRKGDGAEGKR KIWMIAQQHPGEHMAEWFMEGVIERLQQKDDAALQQLLAEADLYLVPNVNPDGAFHGHLRTNASGKDLNRAWQDSTEALS PEVSFVRQQMEKYGVDMFLDVHGDEEIPYVFTAACEGNPGYTAQQRQLEERFRSRLCEVSDNFQTAHGYPRGAPGQANMN LAANAVGERYKCLSLTLEMPFKDHDNAPDPVTGWSGKRSAQLAGDILTVLSEMVKELR
Sequences:
>Translated_378_residues MTLTIGSDFDSGNIQVLDASDPAHIRLAIRPDTQSAHFQWFHFKADGLNVGQTYGFSLTNASQSTFNSAWSGYNAVASYD HQNWFRVASDFDGKALNFSLAAEQPQVWFAYFEPYSRERHDWLIEQAQEKAGTQLLAVGKSVEGRDIQLLRKGDGAEGKR KIWMIAQQHPGEHMAEWFMEGVIERLQQKDDAALQQLLAEADLYLVPNVNPDGAFHGHLRTNASGKDLNRAWQDSTEALS PEVSFVRQQMEKYGVDMFLDVHGDEEIPYVFTAACEGNPGYTAQQRQLEERFRSRLCEVSDNFQTAHGYPRGAPGQANMN LAANAVGERYKCLSLTLEMPFKDHDNAPDPVTGWSGKRSAQLAGDILTVLSEMVKELR >Mature_377_residues TLTIGSDFDSGNIQVLDASDPAHIRLAIRPDTQSAHFQWFHFKADGLNVGQTYGFSLTNASQSTFNSAWSGYNAVASYDH QNWFRVASDFDGKALNFSLAAEQPQVWFAYFEPYSRERHDWLIEQAQEKAGTQLLAVGKSVEGRDIQLLRKGDGAEGKRK IWMIAQQHPGEHMAEWFMEGVIERLQQKDDAALQQLLAEADLYLVPNVNPDGAFHGHLRTNASGKDLNRAWQDSTEALSP EVSFVRQQMEKYGVDMFLDVHGDEEIPYVFTAACEGNPGYTAQQRQLEERFRSRLCEVSDNFQTAHGYPRGAPGQANMNL AANAVGERYKCLSLTLEMPFKDHDNAPDPVTGWSGKRSAQLAGDILTVLSEMVKELR
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31657119, Length=312, Percent_Identity=24.3589743589744, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI222352158, Length=311, Percent_Identity=23.4726688102894, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI190194403, Length=334, Percent_Identity=24.8502994011976, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI170763513, Length=323, Percent_Identity=24.4582043343653, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI120444924, Length=326, Percent_Identity=25.4601226993865, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI115533904, Length=374, Percent_Identity=27.5401069518717, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI193202888, Length=309, Percent_Identity=25.5663430420712, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24641847, Length=322, Percent_Identity=25.1552795031056, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI161077807, Length=322, Percent_Identity=24.8447204968944, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI28571179, Length=322, Percent_Identity=24.8447204968944, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI24641845, Length=322, Percent_Identity=24.8447204968944, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI24651466, Length=282, Percent_Identity=27.3049645390071, Blast_Score=76, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 42368; Mature: 42237
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTIGSDFDSGNIQVLDASDPAHIRLAIRPDTQSAHFQWFHFKADGLNVGQTYGFSLTN CEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCEEECC ASQSTFNSAWSGYNAVASYDHQNWFRVASDFDGKALNFSLAAEQPQVWFAYFEPYSRERH CCHHHHHHHCCCCCHHCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHH DWLIEQAQEKAGTQLLAVGKSVEGRDIQLLRKGDGAEGKRKIWMIAQQHPGEHMAEWFME HHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHH GVIERLQQKDDAALQQLLAEADLYLVPNVNPDGAFHGHLRTNASGKDLNRAWQDSTEALS HHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCCCEECEEECCCCCCHHHHHHHCHHHHCC PEVSFVRQQMEKYGVDMFLDVHGDEEIPYVFTAACEGNPGYTAQQRQLEERFRSRLCEVS HHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC DNFQTAHGYPRGAPGQANMNLAANAVGERYKCLSLTLEMPFKDHDNAPDPVTGWSGKRSA CCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCH QLAGDILTVLSEMVKELR HHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLTIGSDFDSGNIQVLDASDPAHIRLAIRPDTQSAHFQWFHFKADGLNVGQTYGFSLTN EEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCEEECC ASQSTFNSAWSGYNAVASYDHQNWFRVASDFDGKALNFSLAAEQPQVWFAYFEPYSRERH CCHHHHHHHCCCCCHHCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHH DWLIEQAQEKAGTQLLAVGKSVEGRDIQLLRKGDGAEGKRKIWMIAQQHPGEHMAEWFME HHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHH GVIERLQQKDDAALQQLLAEADLYLVPNVNPDGAFHGHLRTNASGKDLNRAWQDSTEALS HHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCCCEECEEECCCCCCHHHHHHHCHHHHCC PEVSFVRQQMEKYGVDMFLDVHGDEEIPYVFTAACEGNPGYTAQQRQLEERFRSRLCEVS HHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC DNFQTAHGYPRGAPGQANMNLAANAVGERYKCLSLTLEMPFKDHDNAPDPVTGWSGKRSA CCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCH QLAGDILTVLSEMVKELR HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]