Click here to switch to the map view.

The map label for this gene is rcnA [H]

Identifier: 66046162

GI number: 66046162

Start: 3520125

End: 3520994

Strand: Reverse

Name: rcnA [H]

Synonym: Psyr_2931

Alternate gene names: 66046162

Gene position: 3520994-3520125 (Counterclockwise)

Preceding gene: 66046163

Following gene: 66046161

Centisome position: 57.78

GC content: 60.92

Gene sequence:

>870_bases
ATGCCGAATTTCGTCGAGCTGTTGCAGCAAGGTGGTTCGCATGCCTGGCTGTATTTCCCCAGTGCCATTCTGCTGGGCGC
GTTGCACGGGCTGGAGCCCGGGCATTCGAAAACCATGATGGCGGCGTTCATCGTGGCCATTCGTGGCTCCGTGAAACAGG
CCGTGATGCTCGGCGTCGCCGCTACCGTCTCGCACACTGCCGTTGTCTGGCTGGTGGCCATCGGCGGGATGTATCTGGGG
CAGGGGCTGGACGCTGAAACCACGGAGCCTTATTTTCAGCTCGCGTCGTCTGCCGTGATCATCGCCATCGCGCTGTGGAT
GCTGTGGCGCACCTGGCGTGGCGAGCAGTTGTATAAGTTCGAAAGTGCCCGGCTCAGTCACGGGCATACAGGCCATGGCC
ATGAGCACGACATTGACTTCAAAGAGCATGAGCACGGTCACAGCCATGACCACAGCGATCTGGGCGGCTTGAGCCTGAGC
GCCGAGGGCTACCAGGATGCCCATGAAAAGGCCCATGCCGACGACATCCGCAAGCGCTTCACCCATCGAGAGGTCAGCAA
TGGCCAGATCCTGATGTTCGGCTTGACCGGGGGACTTATCCCTTGCCCGGCGGCCATCACCGTGCTGCTGCTGTGCCTGC
AGGTGCAGCAGGTCACGCTTGGCGCGATGATGGTGATCTGTTTCAGCGTGGGACTTGCCATCACGTTGGTCACCGTTGGT
GCGGCCGCCGCCATCGGTGCGCGAAGAGCCTCGAATCGTTTCCCCTGGCTCACTGCAGCCGCTCGACGCGCACCTTACCT
GTCCAGCGTCCTGATTATTTGTGTCGGGATGTATGTAGGAATCAACGGTTGGATCGGCCTGCACTCGTGA

Upstream 100 bases:

>100_bases
ATCGATCACTGCCTCGAAGACACGCTAGGTTCACTCGCCAAGGGTGAGCGGGCACCGCTGGAAGCCTTCAAGCAAATCAC
CAAATACCTTTAGGTCTCGC

Downstream 100 bases:

>100_bases
GCTGGCCTGACGCTTGGGCGTGGCGGCTGTCACAAAAATAATTTGTGTTTCTTGAAAATATATATTGATTTTTATTGGTG
TCGCCCGGCTTTAGCATGAG

Product: nickel/cobalt efflux protein RcnA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MPNFVELLQQGGSHAWLYFPSAILLGALHGLEPGHSKTMMAAFIVAIRGSVKQAVMLGVAATVSHTAVVWLVAIGGMYLG
QGLDAETTEPYFQLASSAVIIAIALWMLWRTWRGEQLYKFESARLSHGHTGHGHEHDIDFKEHEHGHSHDHSDLGGLSLS
AEGYQDAHEKAHADDIRKRFTHREVSNGQILMFGLTGGLIPCPAAITVLLLCLQVQQVTLGAMMVICFSVGLAITLVTVG
AAAAIGARRASNRFPWLTAAARRAPYLSSVLIICVGMYVGINGWIGLHS

Sequences:

>Translated_289_residues
MPNFVELLQQGGSHAWLYFPSAILLGALHGLEPGHSKTMMAAFIVAIRGSVKQAVMLGVAATVSHTAVVWLVAIGGMYLG
QGLDAETTEPYFQLASSAVIIAIALWMLWRTWRGEQLYKFESARLSHGHTGHGHEHDIDFKEHEHGHSHDHSDLGGLSLS
AEGYQDAHEKAHADDIRKRFTHREVSNGQILMFGLTGGLIPCPAAITVLLLCLQVQQVTLGAMMVICFSVGLAITLVTVG
AAAAIGARRASNRFPWLTAAARRAPYLSSVLIICVGMYVGINGWIGLHS
>Mature_288_residues
PNFVELLQQGGSHAWLYFPSAILLGALHGLEPGHSKTMMAAFIVAIRGSVKQAVMLGVAATVSHTAVVWLVAIGGMYLGQ
GLDAETTEPYFQLASSAVIIAIALWMLWRTWRGEQLYKFESARLSHGHTGHGHEHDIDFKEHEHGHSHDHSDLGGLSLSA
EGYQDAHEKAHADDIRKRFTHREVSNGQILMFGLTGGLIPCPAAITVLLLCLQVQQVTLGAMMVICFSVGLAITLVTVGA
AAAIGARRASNRFPWLTAAARRAPYLSSVLIICVGMYVGINGWIGLHS

Specific function: Efflux system for nickel and cobalt [H]

COG id: COG2215

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NiCoT transporter (TC 2.A.52) family. RcnA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788423, Length=287, Percent_Identity=55.0522648083624, Blast_Score=298, Evalue=3e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011541 [H]

Pfam domain/function: PF03824 NicO [H]

EC number: NA

Molecular weight: Translated: 31178; Mature: 31046

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNFVELLQQGGSHAWLYFPSAILLGALHGLEPGHSKTMMAAFIVAIRGSVKQAVMLGVA
CCHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ATVSHTAVVWLVAIGGMYLGQGLDAETTEPYFQLASSAVIIAIALWMLWRTWRGEQLYKF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ESARLSHGHTGHGHEHDIDFKEHEHGHSHDHSDLGGLSLSAEGYQDAHEKAHADDIRKRF
HHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
THREVSNGQILMFGLTGGLIPCPAAITVLLLCLQVQQVTLGAMMVICFSVGLAITLVTVG
HHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAAIGARRASNRFPWLTAAARRAPYLSSVLIICVGMYVGINGWIGLHS
HHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
PNFVELLQQGGSHAWLYFPSAILLGALHGLEPGHSKTMMAAFIVAIRGSVKQAVMLGVA
CHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ATVSHTAVVWLVAIGGMYLGQGLDAETTEPYFQLASSAVIIAIALWMLWRTWRGEQLYKF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ESARLSHGHTGHGHEHDIDFKEHEHGHSHDHSDLGGLSLSAEGYQDAHEKAHADDIRKRF
HHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
THREVSNGQILMFGLTGGLIPCPAAITVLLLCLQVQQVTLGAMMVICFSVGLAITLVTVG
HHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAAIGARRASNRFPWLTAAARRAPYLSSVLIICVGMYVGINGWIGLHS
HHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA