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The map label for this gene is ybhD [H]

Identifier: 66046160

GI number: 66046160

Start: 3518594

End: 3519466

Strand: Direct

Name: ybhD [H]

Synonym: Psyr_2929

Alternate gene names: 66046160

Gene position: 3518594-3519466 (Clockwise)

Preceding gene: 66046159

Following gene: 66046164

Centisome position: 57.74

GC content: 60.82

Gene sequence:

>873_bases
ATGATCAAAGAACTGAAAACGTTTATTGCCGTAGCGAGAGAAGGCACGTTCGCTGCGGCGGGCAGCAAGATCGGGCTCAC
CCAGGCCGCTGTCAGTGCGCAGATGCAGCGCCTTGAAGCAGAACTGGGCGTCGAACTGTTCGACCGAAAAGGACGTTCAG
CCCAGCTCAACCGCATGGGGCAGCAGGTGTTGCTGCAAGGTCAGGACCTGGTGCGCCAGTTCAGCAGCCTGGGCACTACG
ACAGTAGGGCTACCCGCGAGCGTGCTGGTGACCATCGGCGCAATTGCCTCTGTACAACGCTCCTTTCTGCCGGAAGCGCT
GGCTCGGTTTCATCAGCAATTCTCTGCGTGCAGGACGCGCGTCATTCCCGGCCTGTCCATGGACCTGGTCAATCAGGTGG
ACGCTGGCGAGATCGACATGGCAGCGATCATCCGCCCGCCCTTCTCACTGCAAAGCGACCTGCGCTGGACGACGCTGGTC
CGTGAGCCCTATCGCCTTATCGTGCCTGCCGACATGCCGGGGGATGACTGGGCCGAGCTGGTTTCGGCTCATCCATTCAT
TCGTTACGATCGATCGTCGTTCGGTGGCCGACAGGTTGACCGGTTCCTGCGCCAGACCCATGTCTCGCTGCGCGAAGTCT
GCGAGCTCGATGAACTGGATGCGATCATCAAACTGGTCGCCAACGGCGTCGGCGTAGCCTTGGTTCCGGAAACGGCAACC
CTGCAGACATGGCACGCCGGTGTGCGCTCTGTCGACTTGAAAGCGCATACGTTCCATCGCGATATCGGGCTGGTACATCG
CGCTCGCCGCAGCCTGACCGAACCGGTGAGCGCGCTGGTGCAACTGATTAACGACCACGCTCTGACTCGTTAG

Upstream 100 bases:

>100_bases
TTTCTCGGTGAGGATCAGGGTGTGGCCGAGGACATGGGATAGGCAGCAACAACAAAATAAACAAATGTGCTTTCAGTAAA
AATACAATTATTCTTTGCCC

Downstream 100 bases:

>100_bases
CGCTGCGCCTGCTCAAGCAGGCCTGGCGCGACGTGGTGTGCGCCAGGCCTTTTACTATTTTGCGAACAGCTGACTCATGT
CCTTGAACGCCTTGAACTCA

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MIKELKTFIAVAREGTFAAAGSKIGLTQAAVSAQMQRLEAELGVELFDRKGRSAQLNRMGQQVLLQGQDLVRQFSSLGTT
TVGLPASVLVTIGAIASVQRSFLPEALARFHQQFSACRTRVIPGLSMDLVNQVDAGEIDMAAIIRPPFSLQSDLRWTTLV
REPYRLIVPADMPGDDWAELVSAHPFIRYDRSSFGGRQVDRFLRQTHVSLREVCELDELDAIIKLVANGVGVALVPETAT
LQTWHAGVRSVDLKAHTFHRDIGLVHRARRSLTEPVSALVQLINDHALTR

Sequences:

>Translated_290_residues
MIKELKTFIAVAREGTFAAAGSKIGLTQAAVSAQMQRLEAELGVELFDRKGRSAQLNRMGQQVLLQGQDLVRQFSSLGTT
TVGLPASVLVTIGAIASVQRSFLPEALARFHQQFSACRTRVIPGLSMDLVNQVDAGEIDMAAIIRPPFSLQSDLRWTTLV
REPYRLIVPADMPGDDWAELVSAHPFIRYDRSSFGGRQVDRFLRQTHVSLREVCELDELDAIIKLVANGVGVALVPETAT
LQTWHAGVRSVDLKAHTFHRDIGLVHRARRSLTEPVSALVQLINDHALTR
>Mature_290_residues
MIKELKTFIAVAREGTFAAAGSKIGLTQAAVSAQMQRLEAELGVELFDRKGRSAQLNRMGQQVLLQGQDLVRQFSSLGTT
TVGLPASVLVTIGAIASVQRSFLPEALARFHQQFSACRTRVIPGLSMDLVNQVDAGEIDMAAIIRPPFSLQSDLRWTTLV
REPYRLIVPADMPGDDWAELVSAHPFIRYDRSSFGGRQVDRFLRQTHVSLREVCELDELDAIIKLVANGVGVALVPETAT
LQTWHAGVRSVDLKAHTFHRDIGLVHRARRSLTEPVSALVQLINDHALTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=274, Percent_Identity=24.4525547445255, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=26.8707482993197, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787601, Length=141, Percent_Identity=26.241134751773, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081904, Length=175, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788481, Length=283, Percent_Identity=25.4416961130742, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787806, Length=285, Percent_Identity=22.1052631578947, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=26.6129032258064, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=289, Percent_Identity=25.2595155709343, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87082024, Length=145, Percent_Identity=30.3448275862069, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=304, Percent_Identity=21.7105263157895, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=248, Percent_Identity=23.7903225806452, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31952; Mature: 31952

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKELKTFIAVAREGTFAAAGSKIGLTQAAVSAQMQRLEAELGVELFDRKGRSAQLNRMG
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHH
QQVLLQGQDLVRQFSSLGTTTVGLPASVLVTIGAIASVQRSFLPEALARFHQQFSACRTR
HHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIPGLSMDLVNQVDAGEIDMAAIIRPPFSLQSDLRWTTLVREPYRLIVPADMPGDDWAEL
HCCCCCHHHHHCCCCCCCCHHHHCCCCCCCHHCCHHHHHHHCCCEEEEECCCCCHHHHHH
VSAHPFIRYDRSSFGGRQVDRFLRQTHVSLREVCELDELDAIIKLVANGVGVALVPETAT
HHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEECCCCHH
LQTWHAGVRSVDLKAHTFHRDIGLVHRARRSLTEPVSALVQLINDHALTR
HHHHHHCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKELKTFIAVAREGTFAAAGSKIGLTQAAVSAQMQRLEAELGVELFDRKGRSAQLNRMG
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHH
QQVLLQGQDLVRQFSSLGTTTVGLPASVLVTIGAIASVQRSFLPEALARFHQQFSACRTR
HHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIPGLSMDLVNQVDAGEIDMAAIIRPPFSLQSDLRWTTLVREPYRLIVPADMPGDDWAEL
HCCCCCHHHHHCCCCCCCCHHHHCCCCCCCHHCCHHHHHHHCCCEEEEECCCCCHHHHHH
VSAHPFIRYDRSSFGGRQVDRFLRQTHVSLREVCELDELDAIIKLVANGVGVALVPETAT
HHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEECCCCHH
LQTWHAGVRSVDLKAHTFHRDIGLVHRARRSLTEPVSALVQLINDHALTR
HHHHHHCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]