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The map label for this gene is arnD

Identifier: 66045928

GI number: 66045928

Start: 3269172

End: 3270053

Strand: Direct

Name: arnD

Synonym: Psyr_2692

Alternate gene names: 66045928

Gene position: 3269172-3270053 (Clockwise)

Preceding gene: 66045927

Following gene: 66045929

Centisome position: 53.65

GC content: 63.61

Gene sequence:

>882_bases
ATGCAGGCAGGCCTGAGAATCGATGTCGACACTTACCGGGGCACCCGTGAGGGCGTGCCCCGGCTGCTGGACATACTCGA
CGAAGCGCAGGTCAAGGCGACCTTCTTTTTCAGTGTCGGCCCCGACAACATGGGGCGCCATCTGTGGCGCCTGGTAAGGC
CCACGTTCTTCTGGAAGATGCTTCGCTCCAACGCGGCGAGCCTGTATGGCTGGGATATTCTGCTGGCCGGCACCGCATGG
CCGGGCAAACCGATCGGCCGGGACCTCGGCCCGCTGATGCGTCGCGCGCTGGATGCCGGTCACGAAATCGGCCTGCATGC
CTGGGATCATCATGGCTGGCAAGCCAATGCCGGACACTGGAGCGACAGACAGTTGACCGCCCAGATACACCGCGGCGTCG
ATTGCCTGAGCGACATCCTCGGCCACCCGGTGGTCTGCTCTGCGGCGGCAGGCTGGCGCGCCGACCAGCGCGTCGTGCAG
GCCAAAGAGGCGTTTGGCTTTCGTTACAACAGTGACTGCCGCGGCGCCAGCCTGTTTCGCCCATTGCTGGCCGACGGCAG
CCTCGGTACCGCTCAGATTCCGGTGGACTTGCCGACCTTCGATGAAGTAATCGGCCCGCACCTCAAGCCGGATGCGTTCA
ACGACTACATTCTCGGCCGCTTCGCTGCACGACAGCTCAATGTCTACACCCTTCATGCCGAAGTGGAAGGGATCATCATG
GCCGACGGTTTCAGGCAACTGTTAAAGCGGGCCAATACCCAGGGCATCCACTTCGCGCCGTTGGGCCATCTGCTGCCCGA
TGCTATCGAACGGTTGCCTTCCGGGCATATCGTTCGCGGCCACCTGCCCGGCCGCGAAGGCTGGCTGGGGGTGCAGCAGT
GA

Upstream 100 bases:

>100_bases
TGATTGGCTGGACGCCGGGTATCGAGCTGAGCGAAACCATCGGCAAAACCCTGGATTTCTTCCTGCGCGAAGCCATGGCT
GAAAAAGCGGATCAGTGCTG

Downstream 100 bases:

>100_bases
TACACGTCAGGCATCGTCATCTTGCGCTGCTGTTATTGGCGTTCGTGCTGGCTTATCTGCTGCCGCTGGGCTTTCACGGC
CTGTGGATTCCCGATGAAAC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MQAGLRIDVDTYRGTREGVPRLLDILDEAQVKATFFFSVGPDNMGRHLWRLVRPTFFWKMLRSNAASLYGWDILLAGTAW
PGKPIGRDLGPLMRRALDAGHEIGLHAWDHHGWQANAGHWSDRQLTAQIHRGVDCLSDILGHPVVCSAAAGWRADQRVVQ
AKEAFGFRYNSDCRGASLFRPLLADGSLGTAQIPVDLPTFDEVIGPHLKPDAFNDYILGRFAARQLNVYTLHAEVEGIIM
ADGFRQLLKRANTQGIHFAPLGHLLPDAIERLPSGHIVRGHLPGREGWLGVQQ

Sequences:

>Translated_293_residues
MQAGLRIDVDTYRGTREGVPRLLDILDEAQVKATFFFSVGPDNMGRHLWRLVRPTFFWKMLRSNAASLYGWDILLAGTAW
PGKPIGRDLGPLMRRALDAGHEIGLHAWDHHGWQANAGHWSDRQLTAQIHRGVDCLSDILGHPVVCSAAAGWRADQRVVQ
AKEAFGFRYNSDCRGASLFRPLLADGSLGTAQIPVDLPTFDEVIGPHLKPDAFNDYILGRFAARQLNVYTLHAEVEGIIM
ADGFRQLLKRANTQGIHFAPLGHLLPDAIERLPSGHIVRGHLPGREGWLGVQQ
>Mature_293_residues
MQAGLRIDVDTYRGTREGVPRLLDILDEAQVKATFFFSVGPDNMGRHLWRLVRPTFFWKMLRSNAASLYGWDILLAGTAW
PGKPIGRDLGPLMRRALDAGHEIGLHAWDHHGWQANAGHWSDRQLTAQIHRGVDCLSDILGHPVVCSAAAGWRADQRVVQ
AKEAFGFRYNSDCRGASLFRPLLADGSLGTAQIPVDLPTFDEVIGPHLKPDAFNDYILGRFAARQLNVYTLHAEVEGIIM
ADGFRQLLKRANTQGIHFAPLGHLLPDAIERLPSGHIVRGHLPGREGWLGVQQ

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily

Homologues:

Organism=Escherichia coli, GI1788590, Length=293, Percent_Identity=62.457337883959, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARND_PSEU2 (Q4ZSZ1)

Other databases:

- EMBL:   CP000075
- RefSeq:   YP_235769.1
- ProteinModelPortal:   Q4ZSZ1
- STRING:   Q4ZSZ1
- GeneID:   3368209
- GenomeReviews:   CP000075_GR
- KEGG:   psb:Psyr_2692
- NMPDR:   fig|205918.4.peg.1768
- eggNOG:   COG0726
- HOGENOM:   HBG298639
- OMA:   CSAVAGW
- ProtClustDB:   PRK15394
- BioCyc:   PSYR205918:PSYR_2692-MONOMER
- HAMAP:   MF_01870
- InterPro:   IPR011330
- InterPro:   IPR002509
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 32551; Mature: 32551

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAGLRIDVDTYRGTREGVPRLLDILDEAQVKATFFFSVGPDNMGRHLWRLVRPTFFWKM
CCCCCEEEHHCCCCCCCCHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
LRSNAASLYGWDILLAGTAWPGKPIGRDLGPLMRRALDAGHEIGLHAWDHHGWQANAGHW
HHHCCCCEECEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC
SDRQLTAQIHRGVDCLSDILGHPVVCSAAAGWRADQRVVQAKEAFGFRYNSDCRGASLFR
CCHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
PLLADGSLGTAQIPVDLPTFDEVIGPHLKPDAFNDYILGRFAARQLNVYTLHAEVEGIIM
HHHCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEEEEEECEEEE
ADGFRQLLKRANTQGIHFAPLGHLLPDAIERLPSGHIVRGHLPGREGWLGVQQ
HHHHHHHHHHCCCCCEEECCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MQAGLRIDVDTYRGTREGVPRLLDILDEAQVKATFFFSVGPDNMGRHLWRLVRPTFFWKM
CCCCCEEEHHCCCCCCCCHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
LRSNAASLYGWDILLAGTAWPGKPIGRDLGPLMRRALDAGHEIGLHAWDHHGWQANAGHW
HHHCCCCEECEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC
SDRQLTAQIHRGVDCLSDILGHPVVCSAAAGWRADQRVVQAKEAFGFRYNSDCRGASLFR
CCHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
PLLADGSLGTAQIPVDLPTFDEVIGPHLKPDAFNDYILGRFAARQLNVYTLHAEVEGIIM
HHHCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEEEEEECEEEE
ADGFRQLLKRANTQGIHFAPLGHLLPDAIERLPSGHIVRGHLPGREGWLGVQQ
HHHHHHHHHHCCCCCEEECCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA