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The map label for this gene is ybhD [H]

Identifier: 66045907

GI number: 66045907

Start: 3242289

End: 3243230

Strand: Reverse

Name: ybhD [H]

Synonym: Psyr_2671

Alternate gene names: 66045907

Gene position: 3243230-3242289 (Counterclockwise)

Preceding gene: 66045918

Following gene: 66045903

Centisome position: 53.22

GC content: 56.48

Gene sequence:

>942_bases
ATGCTCTGTGAATTGAAATATTCACTGGGTCTTGTTCGGAAAAACAAAATGAAGAATTCGATCCAGCACATCCGCGCCTT
CCTGTCAGTGGCTCAGACCGGCAGTTTTTCCAAGGCTGCAGCCACTCTAAACTTGTCGCCGTCTGCACTGACCGTGCAAA
TCCAGCAACTGGAGGATTGGCTCGGCGTTGCCTTGCTGGAACGAAGCCCACGTCATGTCTGCCTGACCGGCGCCGGGCAA
AATGCGCTGTTGCCCATGGAGAAACTGCTGCTGGATCTGGACAACATTGTTAGCGCCGCGCGGGATATCGCAGCCTCACG
ACGCGGCCTGATCACCATCGCCGCATTGCCATCGCTGTGTTCCGGCGTACTGCCTACAGTGTTGAAGACGTTTCGCGAGC
GATTTCCCGGTGTCGAGGTCAGGCTGCGAGATGTCGTCGCGCAACGAATCGATACGCTTGTCATGGAGCGCGAGGTGGAT
TTCGGATTAGGCGTACAGGCTCGGCCCACCCATGGGTTGGAGTTCAACGCCATCCTGGAAGACCGTTTATGCCTGTTCGC
TCCCGAAGACCATCCACTGGCGAAGCGTTGCGCAGTGAGACTGAACGAGATAGCTGTTTTCCCGATCGTTCTTACTGGCA
GGGAAAGCAGCGTTCGCGATCTGGTCGAGCGAGTGTTTGCTGACGAGCAACTGCCTTTATCTGCGGGTCTGGAAGCCAAT
TACATGTCTACGGTACTGGCGTTGGTCAGGCAGGGGCAGGGCATTACGCTTCTTCCGGAGTCGGCGGACGATGGGCGGGG
AGACCTGAGCAAAGTGCCAGTTGATCATCCGGGTGTCGTTCGGCAGATCGGGCTTATTACCCGTTCGGAGCAAACAAGGG
GTCGTTTGCGGGAGAGGGCGAAATCCTACGCTAAGGCTTTGGCCAACGATATTCTCCGGTAA

Upstream 100 bases:

>100_bases
CCGAGTGTGGCGAGCATTGGCTGATCCTCTTCGGCATCCCTGTGCGCGGCAGCGACGAGACACCCTATTGTTGTTTTGCA
AGAGTAATAGCAACGACGCT

Downstream 100 bases:

>100_bases
GATTGATGTGTTCCCAGGGGATAGGAGAAGTCGCTTGATATCTAGTATGACGTCTGTCGCACCTGCTTGATCGCGGCCGC
GATAGCTAGATCGCGTTGCT

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLCELKYSLGLVRKNKMKNSIQHIRAFLSVAQTGSFSKAAATLNLSPSALTVQIQQLEDWLGVALLERSPRHVCLTGAGQ
NALLPMEKLLLDLDNIVSAARDIAASRRGLITIAALPSLCSGVLPTVLKTFRERFPGVEVRLRDVVAQRIDTLVMEREVD
FGLGVQARPTHGLEFNAILEDRLCLFAPEDHPLAKRCAVRLNEIAVFPIVLTGRESSVRDLVERVFADEQLPLSAGLEAN
YMSTVLALVRQGQGITLLPESADDGRGDLSKVPVDHPGVVRQIGLITRSEQTRGRLRERAKSYAKALANDILR

Sequences:

>Translated_313_residues
MLCELKYSLGLVRKNKMKNSIQHIRAFLSVAQTGSFSKAAATLNLSPSALTVQIQQLEDWLGVALLERSPRHVCLTGAGQ
NALLPMEKLLLDLDNIVSAARDIAASRRGLITIAALPSLCSGVLPTVLKTFRERFPGVEVRLRDVVAQRIDTLVMEREVD
FGLGVQARPTHGLEFNAILEDRLCLFAPEDHPLAKRCAVRLNEIAVFPIVLTGRESSVRDLVERVFADEQLPLSAGLEAN
YMSTVLALVRQGQGITLLPESADDGRGDLSKVPVDHPGVVRQIGLITRSEQTRGRLRERAKSYAKALANDILR
>Mature_313_residues
MLCELKYSLGLVRKNKMKNSIQHIRAFLSVAQTGSFSKAAATLNLSPSALTVQIQQLEDWLGVALLERSPRHVCLTGAGQ
NALLPMEKLLLDLDNIVSAARDIAASRRGLITIAALPSLCSGVLPTVLKTFRERFPGVEVRLRDVVAQRIDTLVMEREVD
FGLGVQARPTHGLEFNAILEDRLCLFAPEDHPLAKRCAVRLNEIAVFPIVLTGRESSVRDLVERVFADEQLPLSAGLEAN
YMSTVLALVRQGQGITLLPESADDGRGDLSKVPVDHPGVVRQIGLITRSEQTRGRLRERAKSYAKALANDILR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=276, Percent_Identity=30.7971014492754, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI157672245, Length=269, Percent_Identity=31.9702602230483, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1788748, Length=297, Percent_Identity=27.6094276094276, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787879, Length=279, Percent_Identity=29.7491039426523, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788887, Length=241, Percent_Identity=30.7053941908714, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367136, Length=264, Percent_Identity=28.030303030303, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789204, Length=247, Percent_Identity=27.1255060728745, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081904, Length=286, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=25.0847457627119, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=27.027027027027, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787530, Length=302, Percent_Identity=26.158940397351, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=248, Percent_Identity=29.0322580645161, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788296, Length=230, Percent_Identity=28.695652173913, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=25, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786401, Length=148, Percent_Identity=35.1351351351351, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787589, Length=140, Percent_Identity=30.7142857142857, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=123, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786713, Length=251, Percent_Identity=31.0756972111554, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787806, Length=245, Percent_Identity=26.1224489795918, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87082132, Length=135, Percent_Identity=31.1111111111111, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34356; Mature: 34356

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCELKYSLGLVRKNKMKNSIQHIRAFLSVAQTGSFSKAAATLNLSPSALTVQIQQLEDW
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCEEEEHHHHHHH
LGVALLERSPRHVCLTGAGQNALLPMEKLLLDLDNIVSAARDIAASRRGLITIAALPSLC
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
SGVLPTVLKTFRERFPGVEVRLRDVVAQRIDTLVMEREVDFGLGVQARPTHGLEFNAILE
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHH
DRLCLFAPEDHPLAKRCAVRLNEIAVFPIVLTGRESSVRDLVERVFADEQLPLSAGLEAN
CCEEEECCCCCCHHHHHHHHHHCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHCCCCHH
YMSTVLALVRQGQGITLLPESADDGRGDLSKVPVDHPGVVRQIGLITRSEQTRGRLRERA
HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
KSYAKALANDILR
HHHHHHHHHHHCC
>Mature Secondary Structure
MLCELKYSLGLVRKNKMKNSIQHIRAFLSVAQTGSFSKAAATLNLSPSALTVQIQQLEDW
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCEEEEHHHHHHH
LGVALLERSPRHVCLTGAGQNALLPMEKLLLDLDNIVSAARDIAASRRGLITIAALPSLC
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
SGVLPTVLKTFRERFPGVEVRLRDVVAQRIDTLVMEREVDFGLGVQARPTHGLEFNAILE
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHH
DRLCLFAPEDHPLAKRCAVRLNEIAVFPIVLTGRESSVRDLVERVFADEQLPLSAGLEAN
CCEEEECCCCCCHHHHHHHHHHCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHCCCCHH
YMSTVLALVRQGQGITLLPESADDGRGDLSKVPVDHPGVVRQIGLITRSEQTRGRLRERA
HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
KSYAKALANDILR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]