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The map label for this gene is ydeM [C]

Identifier: 66045882

GI number: 66045882

Start: 3216092

End: 3218263

Strand: Direct

Name: ydeM [C]

Synonym: Psyr_2646

Alternate gene names: 66045882

Gene position: 3216092-3218263 (Clockwise)

Preceding gene: 66045880

Following gene: 66045883

Centisome position: 52.78

GC content: 55.89

Gene sequence:

>2172_bases
ATGGACGCCGCTAAAATCTCGTCGTTTTTGGTAAAGGTGGCATCGCGCTGCAATCTCGATTGCGACTACTGCTACGTCTA
CCATCATGCAGATCAGAGTTGGCGCTCCATGCCCAAATTTCTCTCTGCCGAGCATCGTGAAGCTTTTGCTCGGCAGCTTG
CGCAATACGTGACGCAAACGGATCTCAAACAATGCGCGGTCATTTTGCATGGCGGGGAGCCGCTGCTGGCAGGGGTACAA
ACGCTGGCGGACTTCGCGATACTTCTGCGCTCGACGTGCCCCATTCTTGTTGACGTCAGTCTGCAAACTAACGGGTTGCT
GCTGACTGACGAGGCACTCCAGATCTTGGCTGCAGCAGACATTGGTGTCTCACTGAGCTTGGATGGGCCAAAAATCGCGA
ATGACAAACACCGTTTGACCCGGAAGGGGCGTTCAAGCTTTGAGCAAACCCAGCAGGCGCTCATTCGCTTGCAAAATTAC
CCCTCTGTCTTTGCCGGCGTGATCGCGGTAGTTGACACCTCCACCAGCGCCAGCGAACTCTTCAGCTATTTCGACCAGTT
CAAGATCCCGCGGCTCGATTTTCTGCTTCCAGATGCCCACTGGCTTCGGCCACCACCGGGCAGAAATCAGGATCCGGGTT
TGTACGAGCAGTGGCTTGTGAACGCCTTTGATGTTTGGTTCGACGAGTACCCACACATCCCCCTGCGCACCTTCGAGGCA
CTGCTGGATGTCTGTGCGGGACTGCCTTCCGGGACGGATGCGTTTGGCTTCGGTGACGTGAGCCTGTTGTCCATCGAAAC
TGACGGTACTTATCACGACCTTGACGTCTTGAAGGTCACACAGGATGGCGCTACCCGACTGATCGGCTCTGTCCTGGATA
CACCGATCGCTGAGGTGGCTCAATCACAGGCCATCGAGCAGCACCGGCGCTACCTGCGCAAAGAAGGGTTGTCAGAAGCA
TGTCAATCTTGTGGGATCGTCGACATCTGCGGTGGTGGCTCTCTTCCTCACCGGTTCAACCAAGAGGGTTTCGTCAATCC
TACCGTGTACTGCAATGAGATGAAGCGGTTGGTAGCTCACATCACCGAACGCTTGAACGTGCACTTGAACGAGGGCTGGC
AGGGGGAGGAGCAGATACCGCTTCCAGAAACCTTTGACCTGGCTGAGTTTGAATTAGCCGAGACCTCGGCAGTCCATCTC
CAGTGGCTGTGTGCAGGCGCCGATGTTGATGCGGTACACGGCCTGCATAAAGCATTGGATCTATATCCCGACGATCCGAG
GGCGATGCAATTGCGCTCATTGGACGATGCTTCATTCGCACTAAAGGCGCAGCAGCCTGGTGCAATCGCCTGGGCAGGTG
CTGCCTTAGCTCAAAGTAGGGGGCATGCGTTGTTGGCTGTCGATGGACAGCCCATCACAGCGGTTTCCGACTACTTGGCC
AGAATTCTTAACGACGAAGCGCAGCACGATTGCGATGGATTTTTGGTCGCAGAGGATGACTTGTGGCTGAGGGCACCATT
CGGCACCTCCATCTGTTTCGAGGATGAGGGGCTCGCGGCAAAGGGCAGGGGGCTGGTTCGCCAAGCGCTGAACATCGTAA
AGGCATGGCGTCCGGAGCTTGCTGCTGAAATGCAGCTTGCCTGCAGTGCTATCCAGTTCATCCGTGATCCGAGTGCAGAC
CCACGCAAGATCGTTTCCTTCAGCGACAATTCTGTTCCAGGGGCCTTGTACGTGTCGATTTCTCAGGGTGATCGACTGAT
TGATCCCTACGATCTAGCGGACTCCGTGATCCATGAACACCGACATCAAAAGCTTTACCTGCTTGAGCGATATGCCGCCA
CCGTAGAGCACACTAGTGCGCAGGTCGTCTCTCCTTGGCGCGAAGACTTGCGGCCGCCCTCAGGCTTGCTGCATGCGGTT
TTCGTATTCGTCGAGCTGAGGCGTTTTTGGCTCCACGTCCGTGATCATGGCCCTGCCGAGATGAATTCACGAGCCATCAA
TCAAATCGCGGACACCGACCTGCACCTTGAGCAAGCATTCGAGACCTTGAAGGAATGCCCGTTGACCGAAGTCGGGCAGC
ACCTGGTAAAGGTGTTGCGCATTGCATCCACAGAGGGGATAACAACTGATGAGTTCGCAGCTTACCGTCCCGCTGTCCAG
CCTGTCGGCTGA

Upstream 100 bases:

>100_bases
GCGCTTGCGCTCGCGCGTGCTGACCGAGTCGGATGTAGGCCAGGTCATTACCAGCTATGACCGTATGCACCACCGTCACA
ACCGTTCGTGAGGTGCCCGC

Downstream 100 bases:

>100_bases
TCTGCGTCAGAGGCATGCCCAGCTTCGCGATTACTTTTGTGACAAGGACGCGCAAGCAAACTGTATTGATGGGCAGTGGG
CACTGGCTTTGAGTTGGTCT

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 723; Mature: 723

Protein sequence:

>723_residues
MDAAKISSFLVKVASRCNLDCDYCYVYHHADQSWRSMPKFLSAEHREAFARQLAQYVTQTDLKQCAVILHGGEPLLAGVQ
TLADFAILLRSTCPILVDVSLQTNGLLLTDEALQILAAADIGVSLSLDGPKIANDKHRLTRKGRSSFEQTQQALIRLQNY
PSVFAGVIAVVDTSTSASELFSYFDQFKIPRLDFLLPDAHWLRPPPGRNQDPGLYEQWLVNAFDVWFDEYPHIPLRTFEA
LLDVCAGLPSGTDAFGFGDVSLLSIETDGTYHDLDVLKVTQDGATRLIGSVLDTPIAEVAQSQAIEQHRRYLRKEGLSEA
CQSCGIVDICGGGSLPHRFNQEGFVNPTVYCNEMKRLVAHITERLNVHLNEGWQGEEQIPLPETFDLAEFELAETSAVHL
QWLCAGADVDAVHGLHKALDLYPDDPRAMQLRSLDDASFALKAQQPGAIAWAGAALAQSRGHALLAVDGQPITAVSDYLA
RILNDEAQHDCDGFLVAEDDLWLRAPFGTSICFEDEGLAAKGRGLVRQALNIVKAWRPELAAEMQLACSAIQFIRDPSAD
PRKIVSFSDNSVPGALYVSISQGDRLIDPYDLADSVIHEHRHQKLYLLERYAATVEHTSAQVVSPWREDLRPPSGLLHAV
FVFVELRRFWLHVRDHGPAEMNSRAINQIADTDLHLEQAFETLKECPLTEVGQHLVKVLRIASTEGITTDEFAAYRPAVQ
PVG

Sequences:

>Translated_723_residues
MDAAKISSFLVKVASRCNLDCDYCYVYHHADQSWRSMPKFLSAEHREAFARQLAQYVTQTDLKQCAVILHGGEPLLAGVQ
TLADFAILLRSTCPILVDVSLQTNGLLLTDEALQILAAADIGVSLSLDGPKIANDKHRLTRKGRSSFEQTQQALIRLQNY
PSVFAGVIAVVDTSTSASELFSYFDQFKIPRLDFLLPDAHWLRPPPGRNQDPGLYEQWLVNAFDVWFDEYPHIPLRTFEA
LLDVCAGLPSGTDAFGFGDVSLLSIETDGTYHDLDVLKVTQDGATRLIGSVLDTPIAEVAQSQAIEQHRRYLRKEGLSEA
CQSCGIVDICGGGSLPHRFNQEGFVNPTVYCNEMKRLVAHITERLNVHLNEGWQGEEQIPLPETFDLAEFELAETSAVHL
QWLCAGADVDAVHGLHKALDLYPDDPRAMQLRSLDDASFALKAQQPGAIAWAGAALAQSRGHALLAVDGQPITAVSDYLA
RILNDEAQHDCDGFLVAEDDLWLRAPFGTSICFEDEGLAAKGRGLVRQALNIVKAWRPELAAEMQLACSAIQFIRDPSAD
PRKIVSFSDNSVPGALYVSISQGDRLIDPYDLADSVIHEHRHQKLYLLERYAATVEHTSAQVVSPWREDLRPPSGLLHAV
FVFVELRRFWLHVRDHGPAEMNSRAINQIADTDLHLEQAFETLKECPLTEVGQHLVKVLRIASTEGITTDEFAAYRPAVQ
PVG
>Mature_723_residues
MDAAKISSFLVKVASRCNLDCDYCYVYHHADQSWRSMPKFLSAEHREAFARQLAQYVTQTDLKQCAVILHGGEPLLAGVQ
TLADFAILLRSTCPILVDVSLQTNGLLLTDEALQILAAADIGVSLSLDGPKIANDKHRLTRKGRSSFEQTQQALIRLQNY
PSVFAGVIAVVDTSTSASELFSYFDQFKIPRLDFLLPDAHWLRPPPGRNQDPGLYEQWLVNAFDVWFDEYPHIPLRTFEA
LLDVCAGLPSGTDAFGFGDVSLLSIETDGTYHDLDVLKVTQDGATRLIGSVLDTPIAEVAQSQAIEQHRRYLRKEGLSEA
CQSCGIVDICGGGSLPHRFNQEGFVNPTVYCNEMKRLVAHITERLNVHLNEGWQGEEQIPLPETFDLAEFELAETSAVHL
QWLCAGADVDAVHGLHKALDLYPDDPRAMQLRSLDDASFALKAQQPGAIAWAGAALAQSRGHALLAVDGQPITAVSDYLA
RILNDEAQHDCDGFLVAEDDLWLRAPFGTSICFEDEGLAAKGRGLVRQALNIVKAWRPELAAEMQLACSAIQFIRDPSAD
PRKIVSFSDNSVPGALYVSISQGDRLIDPYDLADSVIHEHRHQKLYLLERYAATVEHTSAQVVSPWREDLRPPSGLLHAV
FVFVELRRFWLHVRDHGPAEMNSRAINQIADTDLHLEQAFETLKECPLTEVGQHLVKVLRIASTEGITTDEFAAYRPAVQ
PVG

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=406, Percent_Identity=22.1674876847291, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI48994973, Length=384, Percent_Identity=25, Blast_Score=81, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 80041; Mature: 80041

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAAKISSFLVKVASRCNLDCDYCYVYHHADQSWRSMPKFLSAEHREAFARQLAQYVTQT
CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLKQCAVILHGGEPLLAGVQTLADFAILLRSTCPILVDVSLQTNGLLLTDEALQILAAAD
HHHHEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHHC
IGVSLSLDGPKIANDKHRLTRKGRSSFEQTQQALIRLQNYPSVFAGVIAVVDTSTSASEL
CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCHHHH
FSYFDQFKIPRLDFLLPDAHWLRPPPGRNQDPGLYEQWLVNAFDVWFDEYPHIPLRTFEA
HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
LLDVCAGLPSGTDAFGFGDVSLLSIETDGTYHDLDVLKVTQDGATRLIGSVLDTPIAEVA
HHHHHCCCCCCCCCCCCCCEEEEEEECCCCEECCEEEEECCCCHHHHHHHHHCCHHHHHH
QSQAIEQHRRYLRKEGLSEACQSCGIVDICGGGSLPHRFNQEGFVNPTVYCNEMKRLVAH
HHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ITERLNVHLNEGWQGEEQIPLPETFDLAEFELAETSAVHLQWLCAGADVDAVHGLHKALD
HHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHH
LYPDDPRAMQLRSLDDASFALKAQQPGAIAWAGAALAQSRGHALLAVDGQPITAVSDYLA
CCCCCCHHHHHHCCCCCCEEEECCCCCCEEEHHHHHHHCCCCEEEEECCCCHHHHHHHHH
RILNDEAQHDCDGFLVAEDDLWLRAPFGTSICFEDEGLAAKGRGLVRQALNIVKAWRPEL
HHHCCHHCCCCCCEEEECCCEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCHHH
AAEMQLACSAIQFIRDPSADPRKIVSFSDNSVPGALYVSISQGDRLIDPYDLADSVIHEH
HHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
RHQKLYLLERYAATVEHTSAQVVSPWREDLRPPSGLLHAVFVFVELRRFWLHVRDHGPAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
MNSRAINQIADTDLHLEQAFETLKECPLTEVGQHLVKVLRIASTEGITTDEFAAYRPAVQ
HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC
PVG
CCC
>Mature Secondary Structure
MDAAKISSFLVKVASRCNLDCDYCYVYHHADQSWRSMPKFLSAEHREAFARQLAQYVTQT
CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLKQCAVILHGGEPLLAGVQTLADFAILLRSTCPILVDVSLQTNGLLLTDEALQILAAAD
HHHHEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHHC
IGVSLSLDGPKIANDKHRLTRKGRSSFEQTQQALIRLQNYPSVFAGVIAVVDTSTSASEL
CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCHHHH
FSYFDQFKIPRLDFLLPDAHWLRPPPGRNQDPGLYEQWLVNAFDVWFDEYPHIPLRTFEA
HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
LLDVCAGLPSGTDAFGFGDVSLLSIETDGTYHDLDVLKVTQDGATRLIGSVLDTPIAEVA
HHHHHCCCCCCCCCCCCCCEEEEEEECCCCEECCEEEEECCCCHHHHHHHHHCCHHHHHH
QSQAIEQHRRYLRKEGLSEACQSCGIVDICGGGSLPHRFNQEGFVNPTVYCNEMKRLVAH
HHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ITERLNVHLNEGWQGEEQIPLPETFDLAEFELAETSAVHLQWLCAGADVDAVHGLHKALD
HHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHH
LYPDDPRAMQLRSLDDASFALKAQQPGAIAWAGAALAQSRGHALLAVDGQPITAVSDYLA
CCCCCCHHHHHHCCCCCCEEEECCCCCCEEEHHHHHHHCCCCEEEEECCCCHHHHHHHHH
RILNDEAQHDCDGFLVAEDDLWLRAPFGTSICFEDEGLAAKGRGLVRQALNIVKAWRPEL
HHHCCHHCCCCCCEEEECCCEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCHHH
AAEMQLACSAIQFIRDPSADPRKIVSFSDNSVPGALYVSISQGDRLIDPYDLADSVIHEH
HHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
RHQKLYLLERYAATVEHTSAQVVSPWREDLRPPSGLLHAVFVFVELRRFWLHVRDHGPAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
MNSRAINQIADTDLHLEQAFETLKECPLTEVGQHLVKVLRIASTEGITTDEFAAYRPAVQ
HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC
PVG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]