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The map label for this gene is arpC [H]

Identifier: 66045842

GI number: 66045842

Start: 3060225

End: 3061661

Strand: Reverse

Name: arpC [H]

Synonym: Psyr_2606

Alternate gene names: 66045842

Gene position: 3061661-3060225 (Counterclockwise)

Preceding gene: 66045843

Following gene: 66045838

Centisome position: 50.24

GC content: 60.06

Gene sequence:

>1437_bases
ATGGATGATAGGCGCAGAATGAACAGATCAATTGGCCCCTGGCTGTTTACGGCACTGTCCTTGAGCGGCTGCTCGTTGAT
TCCGGACTATCAGCGCCCGGCGGCACCGGTTGCCGCGCACTACCCACAATCCTCAGCCTATGCGCCAGCACTCTCTGGTC
CGCTGGCGGCGGACATGGGCTGGCGTGACCTGTTCCGCGACCCGACGCTGCAACAGCTTATCGAAAGCGCCCTGCTCAAC
AATCGTGACTTGCGCGTTGCAGCGCTCAACGTCGAGGCCTATCAAGCGCAATACCGCATTCAGCGCGCCGATCTGTTTCC
CGCGATCAGCGCCACAGGCAGCGGTACCCGGCAACGCCAGCCCGCCAGTATCACGCAGACCGGCGGCCCGGTGACCAGCG
GTACTTATTCGGCAACGCTGGGTATCAGCTCTTACGAGCTGGATTTGTTCGGACGCATACGCAGTCTCAGCGATCAGGCC
TCGCTCACCTATTTGTCCAGCGAAGAGGCCCGGCGCAGCACCCTACTAAGCCTGGTGGCGAGTGTCGCCACTGCCTACCT
GACCTGGCGTGCCGACCAGGAGCTATTGGCCTTGACTCAGGACACGCTGATGTCCTACGAAAAGAGCCTGAAGCTGACCA
CTCGCAGCCAGCAAGTCGGCGCTTCTTCGTCACTGGACCTGGCCCAGTCGCGCACATCGGTGGAGAGCGCACGGGCAAGT
CTGGCGACGTTCCAGCGCCAGGCCGCTCAGGACCTCAATAACCTGACTTTACTGGTGGGCACGGAGGTTGCGGACAGCGC
GCCCAGCCGTCCGTTGTCCTCCGAATGGCTCGCTGAAGTGCCGGCGGGGCTGCCTTCTGATCTGCTGCAACGACGCCCGG
ACATTCTTGAAGCCGAATACCAGTTGCAGTCGGCCAACGCCAGCATCGGTGCTGCGCGAGCGGCATTCTTCCCGAGCATT
ACCCTGACGGCCAACGCCGGTACATCCAGCACCGAACTGTCCGGCTTGTTCAAAGGCGGTTCGGGAGGCTGGGTGTTTTC
ACCGCAGATCGATATCCCGATTTTCAACGCCGGCAGTCTGCGAGCGAGCCTGGATTATTCGAAAATCCAGAAGGATATAA
GCGTTTCTAAGTACGAAAAATCGATACAGACCGCCTTTCAGGAGGTCGCCGATGGTCTGGCAGCGCGTCAGACCTACAAG
CATCAGCTGAAGGCGCAGAGCGATCTTGTACAGGCCAACCAGGAGTATTACCGCCTTGCCGAACGACGTTACCGCATTGG
CGTCGACAGCAGCCTGACACTCCTCGACGCCCAACGCTCTTTATTCAGCGCTCAACAAACCCTGATCACCGACCGACTGT
CGCAACTGACCGCCGAAGTCAATCTCTACAAGGCGCTGGGCGGCGGTTGGACAGAGCGTACATCAACACCTTTGTGA

Upstream 100 bases:

>100_bases
AGATCGCCGAAAAACTCTGCGTCAAGAGCAGTTCCATCGAAACCTACCTGAAACGTTCCGCCGCCAAGCTGGGCATCAGC
GGTCGACATGGACTGGCCAA

Downstream 100 bases:

>100_bases
GGAACTGAAGATGGGCATATTCGAACCTGGAGCACATGTACGCCTTCGCTCGGGCGGCAGAATCATGGTGGTCAAGCATG
AACCCGCGGTTACCCCGCTC

Product: RND efflux system, outer membrane lipoprotein, NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MDDRRRMNRSIGPWLFTALSLSGCSLIPDYQRPAAPVAAHYPQSSAYAPALSGPLAADMGWRDLFRDPTLQQLIESALLN
NRDLRVAALNVEAYQAQYRIQRADLFPAISATGSGTRQRQPASITQTGGPVTSGTYSATLGISSYELDLFGRIRSLSDQA
SLTYLSSEEARRSTLLSLVASVATAYLTWRADQELLALTQDTLMSYEKSLKLTTRSQQVGASSSLDLAQSRTSVESARAS
LATFQRQAAQDLNNLTLLVGTEVADSAPSRPLSSEWLAEVPAGLPSDLLQRRPDILEAEYQLQSANASIGAARAAFFPSI
TLTANAGTSSTELSGLFKGGSGGWVFSPQIDIPIFNAGSLRASLDYSKIQKDISVSKYEKSIQTAFQEVADGLAARQTYK
HQLKAQSDLVQANQEYYRLAERRYRIGVDSSLTLLDAQRSLFSAQQTLITDRLSQLTAEVNLYKALGGGWTERTSTPL

Sequences:

>Translated_478_residues
MDDRRRMNRSIGPWLFTALSLSGCSLIPDYQRPAAPVAAHYPQSSAYAPALSGPLAADMGWRDLFRDPTLQQLIESALLN
NRDLRVAALNVEAYQAQYRIQRADLFPAISATGSGTRQRQPASITQTGGPVTSGTYSATLGISSYELDLFGRIRSLSDQA
SLTYLSSEEARRSTLLSLVASVATAYLTWRADQELLALTQDTLMSYEKSLKLTTRSQQVGASSSLDLAQSRTSVESARAS
LATFQRQAAQDLNNLTLLVGTEVADSAPSRPLSSEWLAEVPAGLPSDLLQRRPDILEAEYQLQSANASIGAARAAFFPSI
TLTANAGTSSTELSGLFKGGSGGWVFSPQIDIPIFNAGSLRASLDYSKIQKDISVSKYEKSIQTAFQEVADGLAARQTYK
HQLKAQSDLVQANQEYYRLAERRYRIGVDSSLTLLDAQRSLFSAQQTLITDRLSQLTAEVNLYKALGGGWTERTSTPL
>Mature_478_residues
MDDRRRMNRSIGPWLFTALSLSGCSLIPDYQRPAAPVAAHYPQSSAYAPALSGPLAADMGWRDLFRDPTLQQLIESALLN
NRDLRVAALNVEAYQAQYRIQRADLFPAISATGSGTRQRQPASITQTGGPVTSGTYSATLGISSYELDLFGRIRSLSDQA
SLTYLSSEEARRSTLLSLVASVATAYLTWRADQELLALTQDTLMSYEKSLKLTTRSQQVGASSSLDLAQSRTSVESARAS
LATFQRQAAQDLNNLTLLVGTEVADSAPSRPLSSEWLAEVPAGLPSDLLQRRPDILEAEYQLQSANASIGAARAAFFPSI
TLTANAGTSSTELSGLFKGGSGGWVFSPQIDIPIFNAGSLRASLDYSKIQKDISVSKYEKSIQTAFQEVADGLAARQTYK
HQLKAQSDLVQANQEYYRLAERRYRIGVDSSLTLLDAQRSLFSAQQTLITDRLSQLTAEVNLYKALGGGWTERTSTPL

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=462, Percent_Identity=42.2077922077922, Blast_Score=327, Evalue=2e-90,
Organism=Escherichia coli, GI2367348, Length=473, Percent_Identity=26.6384778012685, Blast_Score=126, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 51976; Mature: 51976

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDRRRMNRSIGPWLFTALSLSGCSLIPDYQRPAAPVAAHYPQSSAYAPALSGPLAADMG
CCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
WRDLFRDPTLQQLIESALLNNRDLRVAALNVEAYQAQYRIQRADLFPAISATGSGTRQRQ
HHHHHCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHCCCCCCCCCCC
PASITQTGGPVTSGTYSATLGISSYELDLFGRIRSLSDQASLTYLSSEEARRSTLLSLVA
CCCCCCCCCCCCCCCEEEEECCCEEHHHHHHHHHHCCCCHHEEEECCHHHHHHHHHHHHH
SVATAYLTWRADQELLALTQDTLMSYEKSLKLTTRSQQVGASSSLDLAQSRTSVESARAS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECHHHCCCCCCHHHHHHHHHHHHHHHH
LATFQRQAAQDLNNLTLLVGTEVADSAPSRPLSSEWLAEVPAGLPSDLLQRRPDILEAEY
HHHHHHHHHHHHCCEEEEEECCHHCCCCCCCCCHHHHHHCCCCCCHHHHHCCCCHHHHHH
QLQSANASIGAARAAFFPSITLTANAGTSSTELSGLFKGGSGGWVFSPQIDIPIFNAGSL
HHHHCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHEEECCCCCEEECCCCCCEEECCCCC
RASLDYSKIQKDISVSKYEKSIQTAFQEVADGLAARQTYKHQLKAQSDLVQANQEYYRLA
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERRYRIGVDSSLTLLDAQRSLFSAQQTLITDRLSQLTAEVNLYKALGGGWTERTSTPL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDDRRRMNRSIGPWLFTALSLSGCSLIPDYQRPAAPVAAHYPQSSAYAPALSGPLAADMG
CCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
WRDLFRDPTLQQLIESALLNNRDLRVAALNVEAYQAQYRIQRADLFPAISATGSGTRQRQ
HHHHHCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHCCCCCCCCCCC
PASITQTGGPVTSGTYSATLGISSYELDLFGRIRSLSDQASLTYLSSEEARRSTLLSLVA
CCCCCCCCCCCCCCCEEEEECCCEEHHHHHHHHHHCCCCHHEEEECCHHHHHHHHHHHHH
SVATAYLTWRADQELLALTQDTLMSYEKSLKLTTRSQQVGASSSLDLAQSRTSVESARAS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECHHHCCCCCCHHHHHHHHHHHHHHHH
LATFQRQAAQDLNNLTLLVGTEVADSAPSRPLSSEWLAEVPAGLPSDLLQRRPDILEAEY
HHHHHHHHHHHHCCEEEEEECCHHCCCCCCCCCHHHHHHCCCCCCHHHHHCCCCHHHHHH
QLQSANASIGAARAAFFPSITLTANAGTSSTELSGLFKGGSGGWVFSPQIDIPIFNAGSL
HHHHCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHEEECCCCCEEECCCCCCEEECCCCC
RASLDYSKIQKDISVSKYEKSIQTAFQEVADGLAARQTYKHQLKAQSDLVQANQEYYRLA
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERRYRIGVDSSLTLLDAQRSLFSAQQTLITDRLSQLTAEVNLYKALGGGWTERTSTPL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]