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The map label for this gene is yhjC [H]

Identifier: 66045716

GI number: 66045716

Start: 2877813

End: 2878730

Strand: Direct

Name: yhjC [H]

Synonym: Psyr_2480

Alternate gene names: 66045716

Gene position: 2877813-2878730 (Clockwise)

Preceding gene: 66045715

Following gene: 66045717

Centisome position: 47.23

GC content: 62.09

Gene sequence:

>918_bases
ATGGATCGATTCAACGCCATGCGCGTGTTCACCCGTATCGTCGAGCTGGGCGGTTTCGCCAGGGCGGCCGAGAGTCTGCA
CATGCCGCGTGCCTCGGTGACGATTCTGATCAAGCAGCTCGAAGCGCATCTGGGCGTACAGCTTTTGCAGCGTACGACGC
GGCAGGTCAGCGCCACCCCGGACGGCAAGGCCTATTACCAGCGCTGCGTCAGCCTGCTGGCCGATCTGGACGATGCCGAA
GCGTCGTTCTCGGCGACGGGGGCCGAGCCCAAGGGGCTGTTGCGTGTCGATCTGCCGGTCAGTCTGGGGCGCATGATCAT
CATCCCGGCGCTGCCTGAATTCAGCCGACGCTACCCGCAGATCCGCCTGGAGATCGGCATGAGTGACAGGCCGGTCGATC
TGATCCGCGAAGGCGTGGACTGCGTGTTGCGTGCCGGAGCGGCACTGGATGAAACACTGGTTGCCAGGCCGCTGGGCAGT
CTGACCCAGATTACCTGCGCCAGTCACGAGTACCTGGAGCAACACGGCACGCCACTGGACCTGCAGGCGCTCGCGCAACA
TCAGGTAATCGAATATTTTTCGACCAGCACCGGCAAGCGTTATGGGCTCGAGTTCATGGCTGATGGTATGGGCGTCGCAC
ACGCATCGGCCTGCTCGATCGCTGTCAACAGTGCCGACGGTTATGTCGCAGCGTGCGAAGCCGGTTTCGGCCTGATTCAG
GTGCCGCGCTACCATGTCGCCGCGCAATTGCGCAGCGGTGTGCTGGTGGAAGTATTGCGATTGCATCGTCCGCCGCCGCT
GCCACTGACCGCGCTTTACCCCCCGCATCGACAGTTGTCACGACGGGTCAGGGTATTCGTTGATTGGCTGGTGGAATTGT
GTGCCCACACAGATATCAGGGACAGACTGGTTTCCTGA

Upstream 100 bases:

>100_bases
AAAGCACGGCTCTGCACCCAGCCGTCTGGCCTTTCCCGGGCGTCTTTCTTGCAACTGCAAGTTCCCTCATATGTCATCTA
CCTTCAGGTTGCCGGCCATC

Downstream 100 bases:

>100_bases
AAAAAATTCAGAATTATCCCATATAGGCCGCGGCACACTTTCGTGTTTAACTTCCGGCTCTTTCATCCATTTTGAAAAGG
AACGTGTTTCATGGCTCAAG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGKAYYQRCVSLLADLDDAE
ASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRLEIGMSDRPVDLIREGVDCVLRAGAALDETLVARPLGS
LTQITCASHEYLEQHGTPLDLQALAQHQVIEYFSTSTGKRYGLEFMADGMGVAHASACSIAVNSADGYVAACEAGFGLIQ
VPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVELCAHTDIRDRLVS

Sequences:

>Translated_305_residues
MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGKAYYQRCVSLLADLDDAE
ASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRLEIGMSDRPVDLIREGVDCVLRAGAALDETLVARPLGS
LTQITCASHEYLEQHGTPLDLQALAQHQVIEYFSTSTGKRYGLEFMADGMGVAHASACSIAVNSADGYVAACEAGFGLIQ
VPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVELCAHTDIRDRLVS
>Mature_305_residues
MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGKAYYQRCVSLLADLDDAE
ASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRLEIGMSDRPVDLIREGVDCVLRAGAALDETLVARPLGS
LTQITCASHEYLEQHGTPLDLQALAQHQVIEYFSTSTGKRYGLEFMADGMGVAHASACSIAVNSADGYVAACEAGFGLIQ
VPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVELCAHTDIRDRLVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=40.6896551724138, Blast_Score=232, Evalue=3e-62,
Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=32.6315789473684, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=29.6928327645051, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=32.6599326599327, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=26.643598615917, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787589, Length=270, Percent_Identity=27.037037037037, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=25, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789173, Length=142, Percent_Identity=33.8028169014084, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788706, Length=298, Percent_Identity=26.510067114094, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787806, Length=134, Percent_Identity=31.3432835820896, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=29.1970802919708, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33575; Mature: 33575

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATP
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGKAYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCHHHCCCCE
IRLEIGMSDRPVDLIREGVDCVLRAGAALDETLVARPLGSLTQITCASHEYLEQHGTPLD
EEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
LQALAQHQVIEYFSTSTGKRYGLEFMADGMGVAHASACSIAVNSADGYVAACEAGFGLIQ
HHHHHHHHHHHHHHCCCCCHHCHHHHHCCCCHHHHHHHEEEEECCCCEEEECCCCCCEEE
VPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVELCAHTDIR
CCHHHHHHHHHCCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
DRLVS
HHHCC
>Mature Secondary Structure
MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATP
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGKAYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCHHHCCCCE
IRLEIGMSDRPVDLIREGVDCVLRAGAALDETLVARPLGSLTQITCASHEYLEQHGTPLD
EEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
LQALAQHQVIEYFSTSTGKRYGLEFMADGMGVAHASACSIAVNSADGYVAACEAGFGLIQ
HHHHHHHHHHHHHHCCCCCHHCHHHHHCCCCHHHHHHHEEEEECCCCEEEECCCCCCEEE
VPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVELCAHTDIR
CCHHHHHHHHHCCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
DRLVS
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]