Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

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The map label for this gene is ytfQ [C]

Identifier: 66045699

GI number: 66045699

Start: 2851794

End: 2852894

Strand: Direct

Name: ytfQ [C]

Synonym: Psyr_2463

Alternate gene names: 66045699

Gene position: 2851794-2852894 (Clockwise)

Preceding gene: 66045696

Following gene: 66045701

Centisome position: 46.8

GC content: 59.67

Gene sequence:

>1101_bases
ATGAAGGCGTTATATGCTGGCTGGCTGGTACTGTGCAGTTGTCTGTGGGTCGGGGAGACACAGGCTGCCTCGGTGGTATT
CCTGAGCCCCGGCGCAGAATCAGACGGTTATTGGCTGAGTTACTCCCGGGTCATGCAGACGGCTGCCGACACCACCGGCA
TGTCGCTGAAAATACTCTATACCGAGCGCGACACTCGCAAGTTGCTCGATCTGGCGCGAGCGACGCTGCAAGGGGACGAG
CGCCCGGATTACCTGTTGTTCTCCAACGAGCTGAATATCGCCCCTGAAGTGCTGCGTATGTCCGTGGGCAGTGGGGTAAA
GCTGTTTGCTGTCAACAATACGCTGAACGCGGACCAGATTCGGATTCTCGGTGACCTGCCATCGCGTTATCCGGACTTCA
TCGGCAGCCTGGTGGGTAACGATGAGGAGGGCGGTTATCTGACGGCAAAACGGCTTATCAGTCTCGCGGCGCCTGGCGCG
GATGGTCAGGTCATCGACATGCTGGCGTTTTCCGGGACCAACACCACGCCGGTTTCCCTGCTGCGTGAAAAAGGCATGCT
GCTTGCCCTGTCGGAGCATCCAGAGGTGCATCTACGGCAGATTGCGCTGGGTGGCTGGCGACGCGATCGCGTGCTCGAGC
AGGCTCGCGTGCTGTTCAAGCGCTACCCGCAGACACGCCTGGTGTGGGCTGCCAACGAGCAGATGGCGTTTGGTGCAATG
GAGGCATTGCGTGAGCAGGGCGGCAAGCCGGGGCAGGACGTGTTGTTCAGCGCCATCAACGGCACGTCACTTTCACTGCA
GGCTCAGCTCAATGGCAGTCTGAGCGTGGTGGCGTCAGGGCATTTCACCCTGGGCGGATGGGCGATCATTCTCTTGCACC
GTTATGACACGGCCCAACGCCAGGCCCGGCAACAGATCGGCGCACGCATCATCGATGTGGTTCACGTCGTCGAGCCGCAG
GATGCGCAACGTTTTCTGGATGCAGCCAGCAAAGAACGTTACCGGTTCGATATCCAGGCATTCAATGTGGAGGCTTCTGG
CGATGCGTCGCCATTTTCGCTGAAAGGCATGTTGCCGCCTGATCACTCAGGCGGCAGATGA

Upstream 100 bases:

>100_bases
CCGGCTGATAAAGAATCTGCCGAAAGTCTGCAGAACCTTGCTGCCGCAGCCGATAACTCGCTTTTGGCGATAAATCCCTG
CTGCTTCAAGGTTCGTTGAT

Downstream 100 bases:

>100_bases
CCGGTCAGGCGTTACTCGTCGTAGCCCAGGTTCGGTGCCAGCCAGCGTTCGGTGACGCTCAGGTCCTGACCCTTGCGAGC
GGTGTAGCTTTCGACCTGAT

Product: sugar-binding domain-containing protein

Products: NA

Alternate protein names: Sugar ABC Transporter Periplasmic Protein

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILYTERDTRKLLDLARATLQGDE
RPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQIRILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGA
DGQVIDMLAFSGTNTTPVSLLREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM
EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQRQARQQIGARIIDVVHVVEPQ
DAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPPDHSGGR

Sequences:

>Translated_366_residues
MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILYTERDTRKLLDLARATLQGDE
RPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQIRILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGA
DGQVIDMLAFSGTNTTPVSLLREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM
EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQRQARQQIGARIIDVVHVVEPQ
DAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPPDHSGGR
>Mature_366_residues
MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILYTERDTRKLLDLARATLQGDE
RPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQIRILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGA
DGQVIDMLAFSGTNTTPVSLLREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM
EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQRQARQQIGARIIDVVHVVEPQ
DAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPPDHSGGR

Specific function: Unknown

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40099; Mature: 40099

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILY
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHCCCCCCEEEEEE
TERDTRKLLDLARATLQGDERPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQI
ECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCCE
RILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGADGQVIDMLAFSGTNTTPVSL
EEEECCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH
LREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM
HHHCCCEEEECCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQR
HHHHHCCCCCCHHHHEEECCCCEEEEEEEECCCEEEEEECCEEECCEEEEEEECCCHHHH
QARQQIGARIIDVVHVVEPQDAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPP
HHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEECCCCC
DHSGGR
CCCCCC
>Mature Secondary Structure
MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILY
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHCCCCCCEEEEEE
TERDTRKLLDLARATLQGDERPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQI
ECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCCE
RILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGADGQVIDMLAFSGTNTTPVSL
EEEECCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH
LREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM
HHHCCCEEEECCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQR
HHHHHCCCCCCHHHHEEECCCCEEEEEEEECCCEEEEEECCEEECCEEEEEEECCCHHHH
QARQQIGARIIDVVHVVEPQDAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPP
HHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEECCCCC
DHSGGR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA