| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ytfQ [C]
Identifier: 66045699
GI number: 66045699
Start: 2851794
End: 2852894
Strand: Direct
Name: ytfQ [C]
Synonym: Psyr_2463
Alternate gene names: 66045699
Gene position: 2851794-2852894 (Clockwise)
Preceding gene: 66045696
Following gene: 66045701
Centisome position: 46.8
GC content: 59.67
Gene sequence:
>1101_bases ATGAAGGCGTTATATGCTGGCTGGCTGGTACTGTGCAGTTGTCTGTGGGTCGGGGAGACACAGGCTGCCTCGGTGGTATT CCTGAGCCCCGGCGCAGAATCAGACGGTTATTGGCTGAGTTACTCCCGGGTCATGCAGACGGCTGCCGACACCACCGGCA TGTCGCTGAAAATACTCTATACCGAGCGCGACACTCGCAAGTTGCTCGATCTGGCGCGAGCGACGCTGCAAGGGGACGAG CGCCCGGATTACCTGTTGTTCTCCAACGAGCTGAATATCGCCCCTGAAGTGCTGCGTATGTCCGTGGGCAGTGGGGTAAA GCTGTTTGCTGTCAACAATACGCTGAACGCGGACCAGATTCGGATTCTCGGTGACCTGCCATCGCGTTATCCGGACTTCA TCGGCAGCCTGGTGGGTAACGATGAGGAGGGCGGTTATCTGACGGCAAAACGGCTTATCAGTCTCGCGGCGCCTGGCGCG GATGGTCAGGTCATCGACATGCTGGCGTTTTCCGGGACCAACACCACGCCGGTTTCCCTGCTGCGTGAAAAAGGCATGCT GCTTGCCCTGTCGGAGCATCCAGAGGTGCATCTACGGCAGATTGCGCTGGGTGGCTGGCGACGCGATCGCGTGCTCGAGC AGGCTCGCGTGCTGTTCAAGCGCTACCCGCAGACACGCCTGGTGTGGGCTGCCAACGAGCAGATGGCGTTTGGTGCAATG GAGGCATTGCGTGAGCAGGGCGGCAAGCCGGGGCAGGACGTGTTGTTCAGCGCCATCAACGGCACGTCACTTTCACTGCA GGCTCAGCTCAATGGCAGTCTGAGCGTGGTGGCGTCAGGGCATTTCACCCTGGGCGGATGGGCGATCATTCTCTTGCACC GTTATGACACGGCCCAACGCCAGGCCCGGCAACAGATCGGCGCACGCATCATCGATGTGGTTCACGTCGTCGAGCCGCAG GATGCGCAACGTTTTCTGGATGCAGCCAGCAAAGAACGTTACCGGTTCGATATCCAGGCATTCAATGTGGAGGCTTCTGG CGATGCGTCGCCATTTTCGCTGAAAGGCATGTTGCCGCCTGATCACTCAGGCGGCAGATGA
Upstream 100 bases:
>100_bases CCGGCTGATAAAGAATCTGCCGAAAGTCTGCAGAACCTTGCTGCCGCAGCCGATAACTCGCTTTTGGCGATAAATCCCTG CTGCTTCAAGGTTCGTTGAT
Downstream 100 bases:
>100_bases CCGGTCAGGCGTTACTCGTCGTAGCCCAGGTTCGGTGCCAGCCAGCGTTCGGTGACGCTCAGGTCCTGACCCTTGCGAGC GGTGTAGCTTTCGACCTGAT
Product: sugar-binding domain-containing protein
Products: NA
Alternate protein names: Sugar ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILYTERDTRKLLDLARATLQGDE RPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQIRILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGA DGQVIDMLAFSGTNTTPVSLLREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQRQARQQIGARIIDVVHVVEPQ DAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPPDHSGGR
Sequences:
>Translated_366_residues MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILYTERDTRKLLDLARATLQGDE RPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQIRILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGA DGQVIDMLAFSGTNTTPVSLLREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQRQARQQIGARIIDVVHVVEPQ DAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPPDHSGGR >Mature_366_residues MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILYTERDTRKLLDLARATLQGDE RPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQIRILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGA DGQVIDMLAFSGTNTTPVSLLREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQRQARQQIGARIIDVVHVVEPQ DAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPPDHSGGR
Specific function: Unknown
COG id: COG1879
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40099; Mature: 40099
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILY CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHCCCCCCEEEEEE TERDTRKLLDLARATLQGDERPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQI ECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCCE RILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGADGQVIDMLAFSGTNTTPVSL EEEECCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH LREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM HHHCCCEEEECCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQR HHHHHCCCCCCHHHHEEECCCCEEEEEEEECCCEEEEEECCEEECCEEEEEEECCCHHHH QARQQIGARIIDVVHVVEPQDAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPP HHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEECCCCC DHSGGR CCCCCC >Mature Secondary Structure MKALYAGWLVLCSCLWVGETQAASVVFLSPGAESDGYWLSYSRVMQTAADTTGMSLKILY CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHCCCCCCEEEEEE TERDTRKLLDLARATLQGDERPDYLLFSNELNIAPEVLRMSVGSGVKLFAVNNTLNADQI ECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCCE RILGDLPSRYPDFIGSLVGNDEEGGYLTAKRLISLAAPGADGQVIDMLAFSGTNTTPVSL EEEECCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH LREKGMLLALSEHPEVHLRQIALGGWRRDRVLEQARVLFKRYPQTRLVWAANEQMAFGAM HHHCCCEEEECCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH EALREQGGKPGQDVLFSAINGTSLSLQAQLNGSLSVVASGHFTLGGWAIILLHRYDTAQR HHHHHCCCCCCHHHHEEECCCCEEEEEEEECCCEEEEEECCEEECCEEEEEEECCCHHHH QARQQIGARIIDVVHVVEPQDAQRFLDAASKERYRFDIQAFNVEASGDASPFSLKGMLPP HHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEECCCCC DHSGGR CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA