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The map label for this gene is potC [H]

Identifier: 66045570

GI number: 66045570

Start: 2710800

End: 2711594

Strand: Reverse

Name: potC [H]

Synonym: Psyr_2333

Alternate gene names: 66045570

Gene position: 2711594-2710800 (Counterclockwise)

Preceding gene: 66045571

Following gene: 66045569

Centisome position: 44.5

GC content: 61.51

Gene sequence:

>795_bases
ATGTCCAAGAACGGTCCGTTGGCCCTGTCGTTTCATGCGCTGGTGGTGATCTTCATGATGGCCCCGCTGGTGGTGGTGTG
CCTGGTGGCGTTCACCCCGGAAAACACCCTGAGCCTGCCCACCACCCATTTCTCGCTGCGCTGGTTCAAGGCCGTCTTCG
AGCGCGCCGACTTTATCGATTCGTTCTACAACAGCCTGATCCTGGCGTTCGTATCGGCGACGCTGGCCACCCTGATCGCA
GTGCCCGCCGCCCTGGCAATCACGCGCCATACATTCCCGGGCCGCAATTTTTTCAACGCGCTGTTTCTGTCGCCGATCAT
CATTCCGCATCTGGTACTGGGGGTGGCGATGCTGCGCCTGTTTGCGCTGATGGGCGTGAACGGCAGCTTCACCTGGCTGA
TCTTCGCCCATGTGCTGGTCATCACGCCTTACGTACTGCGCCTGGTACTGGCGGCGGCAATTGGCATCGACCGCAGCGCC
GAGCACGCCGCCGAGTCCCTGGGGGCCGACCGTTTCACGCTGTTTCGGCAGATCACCCTGCCAATGATCCTGCCCGGCGT
GGCAGGCGGCTGGTTACTGGCGTTCATCAACAGTTTCGATGAAGTCACGCTGTCGATCTTCGTTACATCGCCCGCGACGC
AGACCCTGCCGGTACGCATGTATGTCTACGCCACCGAATCCATCGACCCGATGATGGCCGCCGTATCGGCGCTGGTCATC
GCCCTCACCGCCGCCACCATGATCCTGCTCGACAGGGTCTATGGGCTGGATCGCGTACTGGTCGGCAAACACTAA

Upstream 100 bases:

>100_bases
GACCCTTGCCGTGGCGCTGCTGTTGGTCAACCTTCTGGTCATGCTGTCCTGGAACCGCATGATCGAAGGCCGTTACAAAA
AAACTCTGGGGGAATGATCC

Downstream 100 bases:

>100_bases
CCGGAGCTTTGACGTTATGGCATTGCTGAAACGACTGACCGAACATGACCGCCCGGTTCTGCCCTTTACCCTTGACGGCC
AGCCGGCCAGCGGTCTGTTG

Product: binding-protein dependent transport system inner membrane protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSKNGPLALSFHALVVIFMMAPLVVVCLVAFTPENTLSLPTTHFSLRWFKAVFERADFIDSFYNSLILAFVSATLATLIA
VPAALAITRHTFPGRNFFNALFLSPIIIPHLVLGVAMLRLFALMGVNGSFTWLIFAHVLVITPYVLRLVLAAAIGIDRSA
EHAAESLGADRFTLFRQITLPMILPGVAGGWLLAFINSFDEVTLSIFVTSPATQTLPVRMYVYATESIDPMMAAVSALVI
ALTAATMILLDRVYGLDRVLVGKH

Sequences:

>Translated_264_residues
MSKNGPLALSFHALVVIFMMAPLVVVCLVAFTPENTLSLPTTHFSLRWFKAVFERADFIDSFYNSLILAFVSATLATLIA
VPAALAITRHTFPGRNFFNALFLSPIIIPHLVLGVAMLRLFALMGVNGSFTWLIFAHVLVITPYVLRLVLAAAIGIDRSA
EHAAESLGADRFTLFRQITLPMILPGVAGGWLLAFINSFDEVTLSIFVTSPATQTLPVRMYVYATESIDPMMAAVSALVI
ALTAATMILLDRVYGLDRVLVGKH
>Mature_263_residues
SKNGPLALSFHALVVIFMMAPLVVVCLVAFTPENTLSLPTTHFSLRWFKAVFERADFIDSFYNSLILAFVSATLATLIAV
PAALAITRHTFPGRNFFNALFLSPIIIPHLVLGVAMLRLFALMGVNGSFTWLIFAHVLVITPYVLRLVLAAAIGIDRSAE
HAAESLGADRFTLFRQITLPMILPGVAGGWLLAFINSFDEVTLSIFVTSPATQTLPVRMYVYATESIDPMMAAVSALVIA
LTAATMILLDRVYGLDRVLVGKH

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=217, Percent_Identity=32.258064516129, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787081, Length=233, Percent_Identity=30.0429184549356, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787714, Length=250, Percent_Identity=29.6, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788764, Length=196, Percent_Identity=27.5510204081633, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786980, Length=225, Percent_Identity=28.4444444444444, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28784; Mature: 28653

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNGPLALSFHALVVIFMMAPLVVVCLVAFTPENTLSLPTTHFSLRWFKAVFERADFID
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SFYNSLILAFVSATLATLIAVPAALAITRHTFPGRNFFNALFLSPIIIPHLVLGVAMLRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FALMGVNGSFTWLIFAHVLVITPYVLRLVLAAAIGIDRSAEHAAESLGADRFTLFRQITL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHH
PMILPGVAGGWLLAFINSFDEVTLSIFVTSPATQTLPVRMYVYATESIDPMMAAVSALVI
HHHHCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
ALTAATMILLDRVYGLDRVLVGKH
HHHHHHHHHHHHHHCCCHHHCCCC
>Mature Secondary Structure 
SKNGPLALSFHALVVIFMMAPLVVVCLVAFTPENTLSLPTTHFSLRWFKAVFERADFID
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SFYNSLILAFVSATLATLIAVPAALAITRHTFPGRNFFNALFLSPIIIPHLVLGVAMLRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FALMGVNGSFTWLIFAHVLVITPYVLRLVLAAAIGIDRSAEHAAESLGADRFTLFRQITL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHH
PMILPGVAGGWLLAFINSFDEVTLSIFVTSPATQTLPVRMYVYATESIDPMMAAVSALVI
HHHHCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
ALTAATMILLDRVYGLDRVLVGKH
HHHHHHHHHHHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]