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The map label for this gene is 66045479

Identifier: 66045479

GI number: 66045479

Start: 2602454

End: 2603398

Strand: Reverse

Name: 66045479

Synonym: Psyr_2239

Alternate gene names: NA

Gene position: 2603398-2602454 (Counterclockwise)

Preceding gene: 66045483

Following gene: 66045474

Centisome position: 42.72

GC content: 60.0

Gene sequence:

>945_bases
GTGCCTGACAAGAAGTTCGCCATCGATCTCGCCTACCGTCCCCGCCTTGCCGACCTCAAACCGCTGACGTCGACGACCCC
ATTGCTCGAACCACAGGCGCTTGCCGCAGGACGCACCACACCAGCAAGCGACTTGAAAAAACGCACCGGCTATGCAGAGA
ACTTCCTCGGCGATTTCATCGTGCCCTGGCCGACTGCCGACGAGGAGCTTGCGCCTGACGTCTATCCTTTGAAGAACGCC
GGCGATCGCCTCGATTACACGCACTTTTCCATCACCATGTCGCGCAGTCGGCGTCTGGCGCTGTATGTCGGCGTCAACAT
TGACGGTGCCAACAGTGTAGAGGTCAAGCGCAGCAAAGATTCCTGGGCATTTGACGGCCGTCTGCCCGCCGAGGCGCAGA
TTGGCGAGAGCGTGTATGCCGACAACCTGCTGGATCGCGGCCATCTGGTTCGGCGTCAGGACCCTAACTGGGGCAAGGAA
GCCGAAGTTGCCAACAGCGACACCTTCCACTTCACCAACTGCTCGCCGCAGATGGGCGCGTTCAACCAGAAGACCTGGCT
GGAACTCGAGGACTACATTCTCGACAACACACGACGCTGGAAATCACGGGTAACGGTGTTCACCGGCCCGGTGCTGCGCG
ACGACGACCGCAGCTACCGCAACGTCAAAATCCCTTCTGCATTCTGGAAGGTCGTAGCCTTTCTCGGTGATGACGGCAAG
CCTTCGGCCAGCGCCTACATGATCGACCAGACCCGCGAGCTGGGTAAGCTGGACATCATGTTCGGCCCACTCAAAACCTG
GCAACGCAGCGTCGCGCAGATCGAACAACTCACCGGCATCCGCTTTGGCGACCTGTCCAGCTACGACGGCTTCTCCAACG
AAGAACGCCTGACCGGCACACGCATCGAAGCCCAGATCCGCGGACCGCAGGATATTCGAGTCTGA

Upstream 100 bases:

>100_bases
CGAATCGGCAGTCGATCATGTCGAACGTCCGGCCTGACGCCACTCTGTAACGCGTCTATGGTGAACTAAACACATTCAAT
CCCCCACAGGAGCAAGCACT

Downstream 100 bases:

>100_bases
CTTGCCGGTAAGCGCGCCCTGCTCCATGTTCGACCCCGAGTGTGCAGCAAGGACACAAACGTGTGACGCCCAGCGCCACA
CGTTTGTAACCTGAGCACTA

Product: DNA/RNA non-specific endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MPDKKFAIDLAYRPRLADLKPLTSTTPLLEPQALAAGRTTPASDLKKRTGYAENFLGDFIVPWPTADEELAPDVYPLKNA
GDRLDYTHFSITMSRSRRLALYVGVNIDGANSVEVKRSKDSWAFDGRLPAEAQIGESVYADNLLDRGHLVRRQDPNWGKE
AEVANSDTFHFTNCSPQMGAFNQKTWLELEDYILDNTRRWKSRVTVFTGPVLRDDDRSYRNVKIPSAFWKVVAFLGDDGK
PSASAYMIDQTRELGKLDIMFGPLKTWQRSVAQIEQLTGIRFGDLSSYDGFSNEERLTGTRIEAQIRGPQDIRV

Sequences:

>Translated_314_residues
MPDKKFAIDLAYRPRLADLKPLTSTTPLLEPQALAAGRTTPASDLKKRTGYAENFLGDFIVPWPTADEELAPDVYPLKNA
GDRLDYTHFSITMSRSRRLALYVGVNIDGANSVEVKRSKDSWAFDGRLPAEAQIGESVYADNLLDRGHLVRRQDPNWGKE
AEVANSDTFHFTNCSPQMGAFNQKTWLELEDYILDNTRRWKSRVTVFTGPVLRDDDRSYRNVKIPSAFWKVVAFLGDDGK
PSASAYMIDQTRELGKLDIMFGPLKTWQRSVAQIEQLTGIRFGDLSSYDGFSNEERLTGTRIEAQIRGPQDIRV
>Mature_313_residues
PDKKFAIDLAYRPRLADLKPLTSTTPLLEPQALAAGRTTPASDLKKRTGYAENFLGDFIVPWPTADEELAPDVYPLKNAG
DRLDYTHFSITMSRSRRLALYVGVNIDGANSVEVKRSKDSWAFDGRLPAEAQIGESVYADNLLDRGHLVRRQDPNWGKEA
EVANSDTFHFTNCSPQMGAFNQKTWLELEDYILDNTRRWKSRVTVFTGPVLRDDDRSYRNVKIPSAFWKVVAFLGDDGKP
SASAYMIDQTRELGKLDIMFGPLKTWQRSVAQIEQLTGIRFGDLSSYDGFSNEERLTGTRIEAQIRGPQDIRV

Specific function: Unknown

COG id: COG1864

COG function: function code F; DNA/RNA endonuclease G, NUC1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001604
- InterPro:   IPR020821
- InterPro:   IPR009003 [H]

Pfam domain/function: PF01223 Endonuclease_NS [H]

EC number: NA

Molecular weight: Translated: 35472; Mature: 35341

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKKFAIDLAYRPRLADLKPLTSTTPLLEPQALAAGRTTPASDLKKRTGYAENFLGDFI
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCHHHHHCCCEE
VPWPTADEELAPDVYPLKNAGDRLDYTHFSITMSRSRRLALYVGVNIDGANSVEVKRSKD
ECCCCCCHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEECCC
SWAFDGRLPAEAQIGESVYADNLLDRGHLVRRQDPNWGKEAEVANSDTFHFTNCSPQMGA
CEEECCCCCCHHHHCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCC
FNQKTWLELEDYILDNTRRWKSRVTVFTGPVLRDDDRSYRNVKIPSAFWKVVAFLGDDGK
CCCCHHHHHHHHHHCCCHHHHHEEEEEECCEEECCCCCCCEEECCHHHHHHHHHHCCCCC
PSASAYMIDQTRELGKLDIMFGPLKTWQRSVAQIEQLTGIRFGDLSSYDGFSNEERLTGT
CCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCE
RIEAQIRGPQDIRV
EEEEEECCCCCCCC
>Mature Secondary Structure 
PDKKFAIDLAYRPRLADLKPLTSTTPLLEPQALAAGRTTPASDLKKRTGYAENFLGDFI
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCHHHHHCCCEE
VPWPTADEELAPDVYPLKNAGDRLDYTHFSITMSRSRRLALYVGVNIDGANSVEVKRSKD
ECCCCCCHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEECCC
SWAFDGRLPAEAQIGESVYADNLLDRGHLVRRQDPNWGKEAEVANSDTFHFTNCSPQMGA
CEEECCCCCCHHHHCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCC
FNQKTWLELEDYILDNTRRWKSRVTVFTGPVLRDDDRSYRNVKIPSAFWKVVAFLGDDGK
CCCCHHHHHHHHHHCCCHHHHHEEEEEECCEEECCCCCCCEEECCHHHHHHHHHHCCCCC
PSASAYMIDQTRELGKLDIMFGPLKTWQRSVAQIEQLTGIRFGDLSSYDGFSNEERLTGT
CCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCE
RIEAQIRGPQDIRV
EEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]