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The map label for this gene is oprD [H]

Identifier: 66045367

GI number: 66045367

Start: 2484573

End: 2485829

Strand: Reverse

Name: oprD [H]

Synonym: Psyr_2127

Alternate gene names: 66045367

Gene position: 2485829-2484573 (Counterclockwise)

Preceding gene: 66045369

Following gene: 66045358

Centisome position: 40.79

GC content: 62.13

Gene sequence:

>1257_bases
ATGCGCGTGAATTCTCCCTGCAAACTCCTTTGCGGTCTGTCGGCGGCCGTCGCTGCAAGTCTGGCGCCCATCAGCGGCCA
CAGCGCCGGATTTGTCGAAGACGCCAAGGTCAATCTGAACCTACGCAACTTCTACATCAACCGCAACTTCGTCGACCCGG
CCAACGCGCAGAACTACGCCGAGGAGTGGACACAAAACTTCATTCTCGACGCCCGCTCCGGCTTCACCCAAGGCACCGTC
GGCTTCGGTGTCGACGCGCTTGGCCTCTACTCGCTCAAGCTCGACGGCGGCAAGGGTACCGGCGGTACGCAATTGCTGCC
CATCCATGGCGATGGACGCCCCGCCGACGACTTCGGCCGTCTGGCGGTGGCCGGCAAGGCGCGCTTCTCGAAGACCGAAT
TGAAGGTCGGCGAGTGGATGCCAGTGCTGCCGATCCTGCGCTCGGATGACGGCCGCTCGCTGCCGCAAACCTTTCAGGGC
GGGCAGATCACCTCCAAGGAGATCGACGGCCTGACCCTCTACGGTGGCCAGTTCCGTGGCAACAGCCCGCGCAACGACGC
CAGCATGGAAGACATGTCCCTGAATGGCCGCACCGCGTTCACTTCCGACCGCTTCAACTTTGGCGGCGGCGAATACGTGT
TCAACCAAAATCGCACCCAGGTCGGCGTGTGGTACGCCGAGCTTGAAGACATCTACCACCAGCAATATTTCAACCTGCTG
CACAGCCAGCCGCTGGGCAGCTGGACGCTGGGGGCCAACCTTGGCTACTTCCAGGGCAAGGACGACGGTCAGTCGCTGGC
CGGCGATCTGGACAACAAGACCTGGTCAGCGCTGCTTTCGGCACGGCACGGTGGCAACACCTTTTACCTGGGCCTGCAGA
AAGTCAGCGGCGACAGCGCCTGGATGCGCGTCAACGGCACCAGCGGCGGAACCCTGGCCAACGACAGTTACAACTCCAGC
TTCGACAACGCCAGGGAAAAATCCTGGCAGCTGCGCCACGACTATGACTTCGCAGCCCTGGGCGTTCCCGGCCTGACCCT
GATGAACCGCTACATCAGCGGCGACAACGTGCATACCGGGGCCATCACCGACGGCGAAGAGTGGGCACGGGAAACCGAGC
TGGCTTATGTGTTCCAGAACGGCGCGTTCAAAAGCCTGTCGGTCAAATGGCGCAACTCCACCATGCGTCGCGACTACAGC
ACCAACCAGTTCGACGAAAACCGCCTGATCGTCAGCTACCCGTTGTCGCTGCTCTGA

Upstream 100 bases:

>100_bases
AATCGCCCAAAACAACTGTTTCACAATTGCACGCCGCGTTCCGGCATTTCACTATCGCAGCCAGCTAAACGACTCAATAA
CTACAAAAAAGGTCTGTTCC

Downstream 100 bases:

>100_bases
CCCAGACAGGACGCCGCCGTGGCCGAGGGCGCTGCGGCGGCGTTCTCGATCAGCGCTCTCAATTGTCCTGCAATGACTCC
ACGCCCATTTCATCCCACAC

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MRVNSPCKLLCGLSAAVAASLAPISGHSAGFVEDAKVNLNLRNFYINRNFVDPANAQNYAEEWTQNFILDARSGFTQGTV
GFGVDALGLYSLKLDGGKGTGGTQLLPIHGDGRPADDFGRLAVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFQG
GQITSKEIDGLTLYGGQFRGNSPRNDASMEDMSLNGRTAFTSDRFNFGGGEYVFNQNRTQVGVWYAELEDIYHQQYFNLL
HSQPLGSWTLGANLGYFQGKDDGQSLAGDLDNKTWSALLSARHGGNTFYLGLQKVSGDSAWMRVNGTSGGTLANDSYNSS
FDNAREKSWQLRHDYDFAALGVPGLTLMNRYISGDNVHTGAITDGEEWARETELAYVFQNGAFKSLSVKWRNSTMRRDYS
TNQFDENRLIVSYPLSLL

Sequences:

>Translated_418_residues
MRVNSPCKLLCGLSAAVAASLAPISGHSAGFVEDAKVNLNLRNFYINRNFVDPANAQNYAEEWTQNFILDARSGFTQGTV
GFGVDALGLYSLKLDGGKGTGGTQLLPIHGDGRPADDFGRLAVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFQG
GQITSKEIDGLTLYGGQFRGNSPRNDASMEDMSLNGRTAFTSDRFNFGGGEYVFNQNRTQVGVWYAELEDIYHQQYFNLL
HSQPLGSWTLGANLGYFQGKDDGQSLAGDLDNKTWSALLSARHGGNTFYLGLQKVSGDSAWMRVNGTSGGTLANDSYNSS
FDNAREKSWQLRHDYDFAALGVPGLTLMNRYISGDNVHTGAITDGEEWARETELAYVFQNGAFKSLSVKWRNSTMRRDYS
TNQFDENRLIVSYPLSLL
>Mature_418_residues
MRVNSPCKLLCGLSAAVAASLAPISGHSAGFVEDAKVNLNLRNFYINRNFVDPANAQNYAEEWTQNFILDARSGFTQGTV
GFGVDALGLYSLKLDGGKGTGGTQLLPIHGDGRPADDFGRLAVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFQG
GQITSKEIDGLTLYGGQFRGNSPRNDASMEDMSLNGRTAFTSDRFNFGGGEYVFNQNRTQVGVWYAELEDIYHQQYFNLL
HSQPLGSWTLGANLGYFQGKDDGQSLAGDLDNKTWSALLSARHGGNTFYLGLQKVSGDSAWMRVNGTSGGTLANDSYNSS
FDNAREKSWQLRHDYDFAALGVPGLTLMNRYISGDNVHTGAITDGEEWARETELAYVFQNGAFKSLSVKWRNSTMRRDYS
TNQFDENRLIVSYPLSLL

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 45930; Mature: 45930

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVNSPCKLLCGLSAAVAASLAPISGHSAGFVEDAKVNLNLRNFYINRNFVDPANAQNYA
CCCCCCHHHHHCCHHHHHHHCCCCCCCCCCCEECCEEEEEEEEEEEECCCCCCCCCHHHH
EEWTQNFILDARSGFTQGTVGFGVDALGLYSLKLDGGKGTGGTQLLPIHGDGRPADDFGR
HHHHHHHEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHCC
LAVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFQGGQITSKEIDGLTLYGGQFRG
EEEECCCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCEEEECCEECC
NSPRNDASMEDMSLNGRTAFTSDRFNFGGGEYVFNQNRTQVGVWYAELEDIYHQQYFNLL
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHH
HSQPLGSWTLGANLGYFQGKDDGQSLAGDLDNKTWSALLSARHGGNTFYLGLQKVSGDSA
HCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCE
WMRVNGTSGGTLANDSYNSSFDNAREKSWQLRHDYDFAALGVPGLTLMNRYISGDNVHTG
EEEEECCCCCEECCCCCCCCCCHHHHHCEEEECCCCEEEECCCHHHHHHHHCCCCCEEEC
AITDGEEWARETELAYVFQNGAFKSLSVKWRNSTMRRDYSTNQFDENRLIVSYPLSLL
CCCCHHHHHHHCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCHHCC
>Mature Secondary Structure
MRVNSPCKLLCGLSAAVAASLAPISGHSAGFVEDAKVNLNLRNFYINRNFVDPANAQNYA
CCCCCCHHHHHCCHHHHHHHCCCCCCCCCCCEECCEEEEEEEEEEEECCCCCCCCCHHHH
EEWTQNFILDARSGFTQGTVGFGVDALGLYSLKLDGGKGTGGTQLLPIHGDGRPADDFGR
HHHHHHHEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHCC
LAVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFQGGQITSKEIDGLTLYGGQFRG
EEEECCCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCEEEECCEECC
NSPRNDASMEDMSLNGRTAFTSDRFNFGGGEYVFNQNRTQVGVWYAELEDIYHQQYFNLL
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHH
HSQPLGSWTLGANLGYFQGKDDGQSLAGDLDNKTWSALLSARHGGNTFYLGLQKVSGDSA
HCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCE
WMRVNGTSGGTLANDSYNSSFDNAREKSWQLRHDYDFAALGVPGLTLMNRYISGDNVHTG
EEEEECCCCCEECCCCCCCCCCHHHHHCEEEECCCCEEEECCCHHHHHHHHCCCCCEEEC
AITDGEEWARETELAYVFQNGAFKSLSVKWRNSTMRRDYSTNQFDENRLIVSYPLSLL
CCCCHHHHHHHCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]