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The map label for this gene is ompR [H]

Identifier: 66045272

GI number: 66045272

Start: 2356316

End: 2357095

Strand: Reverse

Name: ompR [H]

Synonym: Psyr_2032

Alternate gene names: 66045272

Gene position: 2357095-2356316 (Counterclockwise)

Preceding gene: 66045276

Following gene: 66045271

Centisome position: 38.68

GC content: 62.44

Gene sequence:

>780_bases
ATGGCGGCACAAGCAGGCGACAGACGCATTATGCAAGCACTTCCCGACACTACCCTGGATGCCGCATCGACCGATCAGCG
CTGGAGCGTTCGTGCGCTGATCGTCGATGACGATGTGGCCATTCGCGAACTGCTCTGCGACTACCTGACGCGCTTCAATA
TCAACGCCCGTGGCGTCACCGACGGCACGCAGATGCGTCAGGCACTGACCGACGAAACCTTCGACGTGGTGGTGCTGGAC
CTGATGCTGCCCGGTGAAGACGGCCTGTCACTGTGCCGCTGGCTGCGCAGTACGTCGGACATCCCGATCCTGATGCTGAC
CGCCCGCTGCGAACCGACTGACCGGATCATCGGCCTGGAACTGGGTGCCGACGATTACATGGCCAAACCGTTCGAGCCGC
GCGAACTGGTCGCGCGCATCCAGACCATTCTGCGCCGGGTCCGTGACGAGCGCAGCGATCAGCGCACCACCATTCGTTTT
GACGCCTGGCGCCTGAACAGCGTCCTGCGTCAGTTGACCGCGGCCGATGGCCTGGTGGTGCCGCTGTCCAACGCCGAGTT
TCGTTTGTTACGCGTGTTTCTCGAGCGGCCACACCGGGTGCTGAGCCGTGAACAGTTGCTCGATGCTGCCCGAGGCCGCT
CGATCGAGGCGTTTGACCGCAGTATCGATTTGCTGGTCTCGCGTCTGCGCCAGAAGCTCGGCGATGACCCGAAGAATCCG
CAACTGATCAAGACCGTGCGCGGTGAAGGCTATCTGTTCGATGCCAGGGAGCTGGGTTGA

Upstream 100 bases:

>100_bases
TTTATGACATGCCCCCGACATTCGGTCGCGCCACCCTACCGCCGAGCCTCCCGGCGAAGTAGCATGAGGGGCAGCGTTGA
TCTTCAACAGCAGCCAGTCC

Downstream 100 bases:

>100_bases
TCCGCAGATTCGATACGCTGTTCGCGCGACTGTTTGGTGGCGCTCTGTTGGCTATCCTGCTGGCGCACCTGCTGGCTTTC
ATCTGGTTCACCCAGTACGG

Product: response regulator receiver:transcriptional regulatory protein, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAAQAGDRRIMQALPDTTLDAASTDQRWSVRALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLD
LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDERSDQRTTIRF
DAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNP
QLIKTVRGEGYLFDARELG

Sequences:

>Translated_259_residues
MAAQAGDRRIMQALPDTTLDAASTDQRWSVRALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLD
LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDERSDQRTTIRF
DAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNP
QLIKTVRGEGYLFDARELG
>Mature_258_residues
AAQAGDRRIMQALPDTTLDAASTDQRWSVRALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDL
MLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDERSDQRTTIRFD
AWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQ
LIKTVRGEGYLFDARELG

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=47.3913043478261, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=36.283185840708, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=41.0480349344978, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1786599, Length=229, Percent_Identity=37.117903930131, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=38.1578947368421, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=39.4736842105263, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=38.4615384615385, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI145693140, Length=230, Percent_Identity=33.4782608695652, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786784, Length=230, Percent_Identity=35.6521739130435, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=34.5291479820628, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082012, Length=227, Percent_Identity=31.7180616740088, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=33.9285714285714, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787375, Length=229, Percent_Identity=32.3144104803493, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790552, Length=229, Percent_Identity=33.1877729257642, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790299, Length=119, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 29492; Mature: 29361

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQAGDRRIMQALPDTTLDAASTDQRWSVRALIVDDDVAIRELLCDYLTRFNINARGVT
CCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
DGTQMRQALTDETFDVVVLDLMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLE
CHHHHHHHHCCCCHHEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEE
LGADDYMAKPFEPRELVARIQTILRRVRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVV
ECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCEEE
PLSNAEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNP
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
QLIKTVRGEGYLFDARELG
HHHHEECCCCEEECHHHCC
>Mature Secondary Structure 
AAQAGDRRIMQALPDTTLDAASTDQRWSVRALIVDDDVAIRELLCDYLTRFNINARGVT
CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
DGTQMRQALTDETFDVVVLDLMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLE
CHHHHHHHHCCCCHHEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEE
LGADDYMAKPFEPRELVARIQTILRRVRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVV
ECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCEEE
PLSNAEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNP
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
QLIKTVRGEGYLFDARELG
HHHHEECCCCEEECHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]