Click here to switch to the map view.

The map label for this gene is 66045131

Identifier: 66045131

GI number: 66045131

Start: 2160584

End: 2161180

Strand: Reverse

Name: 66045131

Synonym: Psyr_1890

Alternate gene names: NA

Gene position: 2161180-2160584 (Counterclockwise)

Preceding gene: 66045132

Following gene: 66045130

Centisome position: 35.47

GC content: 54.77

Gene sequence:

>597_bases
TTGGATGAGCTGAATAGAGGACACGCCGGTCGGACGGTAATTCGCAATATTGAGGCCGCCTGTGAAATGGATCCGGAGAA
GCGGGTGGTCATCTCCAAGACAGATCAGGGCTCGGAAGCCAACATGCCAGGGCACTGGACTGGCTGCGCGCGGCCGACTC
GCGACCCTTTTGTACCCTTTGTAGCCGGGAGAGGCGAGTCTGTCGCGGTACGATATAACTCTAGGTTTGGTAGACGGTTC
GATGACCAGTCTGTCAATGGGCAACCTGACCCAAGCCTTGCTTACGTCTTTCTCGGTCATGAACTTATTCATGCATCCAG
AACGTTACAAGGTACTCAATACCGAGTGAGTCGAGGCCGACCGGATGTCGACGAAGATAGCGGAGCGGCGGAGGAAGAAC
TCCGAACGGTTGGCATCGGGCAGTACGAAGACGAATATCCGTCAGAAAACGCAATACGTCGCGAGCATGGATTGGCGCCT
CGCACAAGTTACTCAGGGAATACAGGAACAAATCTTCGTGAGCCGCCTGAACGGAACTCGCAATATACGGAGGCACGGCT
CAGATCGCTCAACGCCAGACGCTGGTCAGATATGTAA

Upstream 100 bases:

>100_bases
ACTGGAGCCCCCCCATGCCTCGCATTAACCCGACTAGCTTTACTGGAATCTATATTGAAACGACAGGCAATCCGAATCGA
AGTGACTGACCACATCTGCG

Downstream 100 bases:

>100_bases
TCCAGCTGATGGAGTACCGGGCGGCTTTGTAGCTGGCGTTGATGGGTATGGGGAGCCATGGAACATCGTGCGCATAGGTG
CCGTAGGCTTAGCGCACGAT

Product: type III effector HopAP1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MDELNRGHAGRTVIRNIEAACEMDPEKRVVISKTDQGSEANMPGHWTGCARPTRDPFVPFVAGRGESVAVRYNSRFGRRF
DDQSVNGQPDPSLAYVFLGHELIHASRTLQGTQYRVSRGRPDVDEDSGAAEEELRTVGIGQYEDEYPSENAIRREHGLAP
RTSYSGNTGTNLREPPERNSQYTEARLRSLNARRWSDM

Sequences:

>Translated_198_residues
MDELNRGHAGRTVIRNIEAACEMDPEKRVVISKTDQGSEANMPGHWTGCARPTRDPFVPFVAGRGESVAVRYNSRFGRRF
DDQSVNGQPDPSLAYVFLGHELIHASRTLQGTQYRVSRGRPDVDEDSGAAEEELRTVGIGQYEDEYPSENAIRREHGLAP
RTSYSGNTGTNLREPPERNSQYTEARLRSLNARRWSDM
>Mature_198_residues
MDELNRGHAGRTVIRNIEAACEMDPEKRVVISKTDQGSEANMPGHWTGCARPTRDPFVPFVAGRGESVAVRYNSRFGRRF
DDQSVNGQPDPSLAYVFLGHELIHASRTLQGTQYRVSRGRPDVDEDSGAAEEELRTVGIGQYEDEYPSENAIRREHGLAP
RTSYSGNTGTNLREPPERNSQYTEARLRSLNARRWSDM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22267; Mature: 22267

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELNRGHAGRTVIRNIEAACEMDPEKRVVISKTDQGSEANMPGHWTGCARPTRDPFVPF
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
VAGRGESVAVRYNSRFGRRFDDQSVNGQPDPSLAYVFLGHELIHASRTLQGTQYRVSRGR
EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCEEEECCCC
PDVDEDSGAAEEELRTVGIGQYEDEYPSENAIRREHGLAPRTSYSGNTGTNLREPPERNS
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
QYTEARLRSLNARRWSDM
HHHHHHHHHHHCHHCCCC
>Mature Secondary Structure
MDELNRGHAGRTVIRNIEAACEMDPEKRVVISKTDQGSEANMPGHWTGCARPTRDPFVPF
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
VAGRGESVAVRYNSRFGRRFDDQSVNGQPDPSLAYVFLGHELIHASRTLQGTQYRVSRGR
EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCEEEECCCC
PDVDEDSGAAEEELRTVGIGQYEDEYPSENAIRREHGLAPRTSYSGNTGTNLREPPERNS
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
QYTEARLRSLNARRWSDM
HHHHHHHHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA