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The map label for this gene is ydaL [H]

Identifier: 66045091

GI number: 66045091

Start: 2125940

End: 2126497

Strand: Reverse

Name: ydaL [H]

Synonym: Psyr_1847

Alternate gene names: 66045091

Gene position: 2126497-2125940 (Counterclockwise)

Preceding gene: 66045092

Following gene: 66045090

Centisome position: 34.9

GC content: 60.22

Gene sequence:

>558_bases
ATGCAAGACGACGATTTTTCCCTGTTCAGAAGCGAGACACGTGGCGTCAAGCCGCTCAAGCATGAACACGCCGATGTCGG
CAAACCCAAGACCGATCGAAAAATGCTGGCCCGCCTGCGCCAGTCGGCGACCTTGCGCACCGACTCGGTGACCGTCGACG
GCTTGTCGGATCAATTCGTGATCGACGTCGGTCCTGAAGATGTTCTGAGCTGGTCGCGTGACGGTGTGCAGGAAGGTCAG
ATGCGCAAGCTCAAACTCGGGCAGATCAGCTTCGAGGGCAGCCTGGACCTGCATGGCATGAGCGTGGAAGTGGCGCGCGA
GACGCTGTGGGAATTTCTGGCTGAAGCAACCCGTCTGGAAATACGCTGCGTACGCGTCACCCATGGCAAGGCGGTACGCC
TGGACGGCAAGCGGCCGATGATCAAGAGCCACGTCAACACCTGGCTGCGTCAGCATTCGCAGGTACTGGGCTTTTGCTCC
TGCCTGGCCAAACATGGCGGTGCAGGTGCGGTGTACGTGATCCTCAGGCGCACCATGATGGAAGGGCGCGACGAGTAG

Upstream 100 bases:

>100_bases
GCGCAGTGCTGGCGGCTTGAGTATCTCTTCGCATCTGATGAAAAAACACAACTGACCCTCTCGCCGGACCGGTTAGAATG
GCCTCCTTCGCGGAGGCCCC

Downstream 100 bases:

>100_bases
AACCCGCCGCGCCCTTTCAGTCAGTCAGACTCGTCGTCGGGCTGCATGTTGCCGCCCCGCTGGTGACTCAGCGACCCGGG
CCAGGACCGCCAGGACCAGG

Product: Smr protein/MutS2 C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQDDDFSLFRSETRGVKPLKHEHADVGKPKTDRKMLARLRQSATLRTDSVTVDGLSDQFVIDVGPEDVLSWSRDGVQEGQ
MRKLKLGQISFEGSLDLHGMSVEVARETLWEFLAEATRLEIRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHSQVLGFCS
CLAKHGGAGAVYVILRRTMMEGRDE

Sequences:

>Translated_185_residues
MQDDDFSLFRSETRGVKPLKHEHADVGKPKTDRKMLARLRQSATLRTDSVTVDGLSDQFVIDVGPEDVLSWSRDGVQEGQ
MRKLKLGQISFEGSLDLHGMSVEVARETLWEFLAEATRLEIRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHSQVLGFCS
CLAKHGGAGAVYVILRRTMMEGRDE
>Mature_185_residues
MQDDDFSLFRSETRGVKPLKHEHADVGKPKTDRKMLARLRQSATLRTDSVTVDGLSDQFVIDVGPEDVLSWSRDGVQEGQ
MRKLKLGQISFEGSLDLHGMSVEVARETLWEFLAEATRLEIRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHSQVLGFCS
CLAKHGGAGAVYVILRRTMMEGRDE

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=179, Percent_Identity=31.8435754189944, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788671, Length=175, Percent_Identity=26.8571428571429, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 20888; Mature: 20888

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDDDFSLFRSETRGVKPLKHEHADVGKPKTDRKMLARLRQSATLRTDSVTVDGLSDQFV
CCCCHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCEE
IDVGPEDVLSWSRDGVQEGQMRKLKLGQISFEGSLDLHGMSVEVARETLWEFLAEATRLE
EECCHHHHHHHCCCCCCCCCHHEEEECEEEECCCCEECCCHHHHHHHHHHHHHHHHHHEE
IRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHSQVLGFCSCLAKHGGAGAVYVILRRTMM
EEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EGRDE
CCCCC
>Mature Secondary Structure
MQDDDFSLFRSETRGVKPLKHEHADVGKPKTDRKMLARLRQSATLRTDSVTVDGLSDQFV
CCCCHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCEE
IDVGPEDVLSWSRDGVQEGQMRKLKLGQISFEGSLDLHGMSVEVARETLWEFLAEATRLE
EECCHHHHHHHCCCCCCCCCHHEEEECEEEECCCCEECCCHHHHHHHHHHHHHHHHHHEE
IRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHSQVLGFCSCLAKHGGAGAVYVILRRTMM
EEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EGRDE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]