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The map label for this gene is yncC [C]

Identifier: 66045060

GI number: 66045060

Start: 2091615

End: 2092274

Strand: Direct

Name: yncC [C]

Synonym: Psyr_1816

Alternate gene names: 66045060

Gene position: 2091615-2092274 (Clockwise)

Preceding gene: 66045055

Following gene: 66045061

Centisome position: 34.32

GC content: 59.7

Gene sequence:

>660_bases
ATGACGTTCAAGGCCCCGGACAGCCTCGCTGAGCAAATTGCTCATCATCTTGCCGAGCGGATCATTCGCGGTGAGCTCAA
GCCTGGAGAGCGTATCCAGGAACAGAAAGTCACGCAGGCGTTGAACGTCAGCCGTGGCTCCGTGCGCGAAGCATTACTGA
TTCTGGAGCGCCGCCACCTGGTAGTGATCCTGCCGCGTCGTGGCGCACAGGTCACGGTGCTCAATGCGCACAATGTCATT
AGCCTGTGCAGCCTGATGAGCGAGCTGTACATTCTGCTGGCCAATGCGGTGGTCGAGCGCTGGAAGACCGAAGAGGATCT
TGCGCCGTTTCTGCAGATACAACAGCGTCTGCAGGCCAGTTTCGAGCAGCAGGACGTCAATGCATTCGTCGAAGAGAGCT
TCAATGTCATGCGCGCGGCTTACCCGTTCGCCAGCAACCCGTACCTCGAAGAAACCGTCGAGAACCTGCAGCCCTCCATG
AGCCGCAGCTATTTCATCGCGCTCGAGCAACGCAAGGCTGACATGGGTGACTACCTGGCGTTGTTCGGCGATCTGCTTGG
CGCAGTGGTGGCGCGGGATATGCCGAAGATTCGTGTCGTGCTGGTCAGCTACTGTCAGCGCAGCTGCCAGCTGGTGCTGG
CCGCCCTGGCAGCGGGCTGA

Upstream 100 bases:

>100_bases
TTTCGTGCCAGTTTCCGCGTTTATGGCCCTGCGCCACCCGTGCCGGTTGAGATACACTCCGCGACTTGCATGCGGAACTG
GTTTTTTCTGAAGGATAGTC

Downstream 100 bases:

>100_bases
CGCCGTGCGCCTGAAGTGCATCAAGCTGGCGGGGTTCAAATCTTTCGTCGACCCCACCACGGTGAACTTCCCCAGCAACA
TGGCGGCTGTCGTCGGCCCC

Product: regulatory protein, GntR

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; Regulatory Protein GntR HTH; GntR-Family Transcriptional Regulator; Mn-Dependent Transcriptional Regulator; Bacterial Regulatory Protein; FCD Domain Protein; GntR Domain Protein; Transcriptional Regulator GntR Family Protein

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTFKAPDSLAEQIAHHLAERIIRGELKPGERIQEQKVTQALNVSRGSVREALLILERRHLVVILPRRGAQVTVLNAHNVI
SLCSLMSELYILLANAVVERWKTEEDLAPFLQIQQRLQASFEQQDVNAFVEESFNVMRAAYPFASNPYLEETVENLQPSM
SRSYFIALEQRKADMGDYLALFGDLLGAVVARDMPKIRVVLVSYCQRSCQLVLAALAAG

Sequences:

>Translated_219_residues
MTFKAPDSLAEQIAHHLAERIIRGELKPGERIQEQKVTQALNVSRGSVREALLILERRHLVVILPRRGAQVTVLNAHNVI
SLCSLMSELYILLANAVVERWKTEEDLAPFLQIQQRLQASFEQQDVNAFVEESFNVMRAAYPFASNPYLEETVENLQPSM
SRSYFIALEQRKADMGDYLALFGDLLGAVVARDMPKIRVVLVSYCQRSCQLVLAALAAG
>Mature_218_residues
TFKAPDSLAEQIAHHLAERIIRGELKPGERIQEQKVTQALNVSRGSVREALLILERRHLVVILPRRGAQVTVLNAHNVIS
LCSLMSELYILLANAVVERWKTEEDLAPFLQIQQRLQASFEQQDVNAFVEESFNVMRAAYPFASNPYLEETVENLQPSMS
RSYFIALEQRKADMGDYLALFGDLLGAVVARDMPKIRVVLVSYCQRSCQLVLAALAAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24639; Mature: 24508

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKAPDSLAEQIAHHLAERIIRGELKPGERIQEQKVTQALNVSRGSVREALLILERRHL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCE
VVILPRRGAQVTVLNAHNVISLCSLMSELYILLANAVVERWKTEEDLAPFLQIQQRLQAS
EEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
FEQQDVNAFVEESFNVMRAAYPFASNPYLEETVENLQPSMSRSYFIALEQRKADMGDYLA
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHCHHHHEEEHHHHCCHHHHHH
LFGDLLGAVVARDMPKIRVVLVSYCQRSCQLVLAALAAG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFKAPDSLAEQIAHHLAERIIRGELKPGERIQEQKVTQALNVSRGSVREALLILERRHL
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCE
VVILPRRGAQVTVLNAHNVISLCSLMSELYILLANAVVERWKTEEDLAPFLQIQQRLQAS
EEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
FEQQDVNAFVEESFNVMRAAYPFASNPYLEETVENLQPSMSRSYFIALEQRKADMGDYLA
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHCHHHHEEEHHHHCCHHHHHH
LFGDLLGAVVARDMPKIRVVLVSYCQRSCQLVLAALAAG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA