Click here to switch to the map view.

The map label for this gene is alc [H]

Identifier: 66045051

GI number: 66045051

Start: 2080620

End: 2081615

Strand: Reverse

Name: alc [H]

Synonym: Psyr_1807

Alternate gene names: 66045051

Gene position: 2081615-2080620 (Counterclockwise)

Preceding gene: 66045052

Following gene: 66045050

Centisome position: 34.16

GC content: 62.25

Gene sequence:

>996_bases
ATGAAAGTTTACGCCGCACCGTTCGAGAAGTTCGTGAACCTGGCCGACGCGCGTCTGGGCACCAGGATCCTTTCGGTCAC
CGATGACTGGTTCGCCGACGCCAACCGGCTGTTCCAGCCGACCCCGGCCGTCTGGAAAGAAGGCGTGTTCGACGACAACG
GCAAGTGGATGGACGGCTGGGAGTCACGCCGCAAGCGTTTCGAAGGGTACGACAGCGCGGTGATTCGCCTCGGTGTGGCG
GGAACCATCAAGGGTGTGGACATCGACACCTCGTTTTTCACCGGTAACTTCCCGCCTTCCGCATCGCTGGAAGCGTGCTT
CCTGGCGTCGGGCGAGCCCGATGAAAACACCGCCTGGACCGAAGTGCTGCCGTCTGTGGAGCTGCAAGGCAACAGCCATC
ATTACCACGAGATCAACAACGATCAGGCGTTCAGCCACCTGCGCTTCAACATCTACCCGGACGGCGGTGTCGCGCGTCTG
CGCGTGTACGGCGTGCCGCATCGCGACTGGTCGAAAGTCAGCGCGGACGAGCAGATCGATCTGGTTGCAGCACTCAATGG
CGGCCGATCGATTGCCTGCTCCGATGAACACTACGGCAGCATGAGCAACATCCTCAACCCTGGTCGCGGCGTGAACATGG
GCGACGGCTGGGAAACCGCGCGGCGCCGCACGCCCGGCAACGACTGGGTGATCGTGGCGCTCGGGCACAAGGGTGAAGTC
GAAAAAGTCATCGTCGATACCCTGCACTTCAAAGGTAACTACCCGGACAGTTGCTCGATCCAGGGCGCCCTGGTCAAGGG
TGGCACCGACAGCCAGATCGAAACCCAGAGCCTGTTCTGGCGCGAGTTGCTGCCCAGCCAGAAGCTGACCATGCACGCCG
AACACGAGTTCGCCGAGCAGATCAAGGCGATCGGCCCGATCACCCACATCCGCCTGAACGTATTCCCGGACGGTGGCGTG
AGCCGCCTGCGAGTGCTGGGCAAGGTGGCCAGGTAA

Upstream 100 bases:

>100_bases
TCGCTTGCGCCCTGTCCGAGATCAACAAGATCGCACTGTTTCGTCTACAGGCGCTTTGAGCGTCGCAGTCATAACCGTAT
TCAGAAGGCAGACAAAGAGC

Downstream 100 bases:

>100_bases
CAACGCATAAACTCTCGTTCCTACGTTCGGCGCTCATCATATACATAAGTCCTGGAGCGCCCTGAATAAAAGGCTGCCAG
GCTTCTGCCCGAAGGGCGTA

Product: allantoicase

Products: NA

Alternate protein names: Allantoate amidinohydrolase [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKVYAAPFEKFVNLADARLGTRILSVTDDWFADANRLFQPTPAVWKEGVFDDNGKWMDGWESRRKRFEGYDSAVIRLGVA
GTIKGVDIDTSFFTGNFPPSASLEACFLASGEPDENTAWTEVLPSVELQGNSHHYHEINNDQAFSHLRFNIYPDGGVARL
RVYGVPHRDWSKVSADEQIDLVAALNGGRSIACSDEHYGSMSNILNPGRGVNMGDGWETARRRTPGNDWVIVALGHKGEV
EKVIVDTLHFKGNYPDSCSIQGALVKGGTDSQIETQSLFWRELLPSQKLTMHAEHEFAEQIKAIGPITHIRLNVFPDGGV
SRLRVLGKVAR

Sequences:

>Translated_331_residues
MKVYAAPFEKFVNLADARLGTRILSVTDDWFADANRLFQPTPAVWKEGVFDDNGKWMDGWESRRKRFEGYDSAVIRLGVA
GTIKGVDIDTSFFTGNFPPSASLEACFLASGEPDENTAWTEVLPSVELQGNSHHYHEINNDQAFSHLRFNIYPDGGVARL
RVYGVPHRDWSKVSADEQIDLVAALNGGRSIACSDEHYGSMSNILNPGRGVNMGDGWETARRRTPGNDWVIVALGHKGEV
EKVIVDTLHFKGNYPDSCSIQGALVKGGTDSQIETQSLFWRELLPSQKLTMHAEHEFAEQIKAIGPITHIRLNVFPDGGV
SRLRVLGKVAR
>Mature_331_residues
MKVYAAPFEKFVNLADARLGTRILSVTDDWFADANRLFQPTPAVWKEGVFDDNGKWMDGWESRRKRFEGYDSAVIRLGVA
GTIKGVDIDTSFFTGNFPPSASLEACFLASGEPDENTAWTEVLPSVELQGNSHHYHEINNDQAFSHLRFNIYPDGGVARL
RVYGVPHRDWSKVSADEQIDLVAALNGGRSIACSDEHYGSMSNILNPGRGVNMGDGWETARRRTPGNDWVIVALGHKGEV
EKVIVDTLHFKGNYPDSCSIQGALVKGGTDSQIETQSLFWRELLPSQKLTMHAEHEFAEQIKAIGPITHIRLNVFPDGGV
SRLRVLGKVAR

Specific function: Unknown

COG id: COG4266

COG function: function code F; Allantoicase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the allantoicase family [H]

Homologues:

Organism=Homo sapiens, GI144953901, Length=365, Percent_Identity=36.4383561643836, Blast_Score=245, Evalue=3e-65,
Organism=Saccharomyces cerevisiae, GI6322220, Length=329, Percent_Identity=38.6018237082067, Blast_Score=228, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005164
- InterPro:   IPR015908
- InterPro:   IPR008979 [H]

Pfam domain/function: PF03561 Allantoicase [H]

EC number: =3.5.3.4 [H]

Molecular weight: Translated: 36728; Mature: 36728

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYAAPFEKFVNLADARLGTRILSVTDDWFADANRLFQPTPAVWKEGVFDDNGKWMDGW
CEEECCHHHHHHHHHHHHHCCEEEEECCHHHHCCHHCCCCCHHHHHCCCCCCCCCCCCCH
ESRRKRFEGYDSAVIRLGVAGTIKGVDIDTSFFTGNFPPSASLEACFLASGEPDENTAWT
HHHHHHHCCCCCEEEEEEECEEEECEEECCCEEECCCCCCCCCCEEEEECCCCCCCCHHH
EVLPSVELQGNSHHYHEINNDQAFSHLRFNIYPDGGVARLRVYGVPHRDWSKVSADEQID
HHCCCEEECCCCCCCEECCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEE
LVAALNGGRSIACSDEHYGSMSNILNPGRGVNMGDGWETARRRTPGNDWVIVALGHKGEV
EEEEECCCCEEEECCHHCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCC
EKVIVDTLHFKGNYPDSCSIQGALVKGGTDSQIETQSLFWRELLPSQKLTMHAEHEFAEQ
HHEEEEHHEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHH
IKAIGPITHIRLNVFPDGGVSRLRVLGKVAR
HHHHCCEEEEEEEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKVYAAPFEKFVNLADARLGTRILSVTDDWFADANRLFQPTPAVWKEGVFDDNGKWMDGW
CEEECCHHHHHHHHHHHHHCCEEEEECCHHHHCCHHCCCCCHHHHHCCCCCCCCCCCCCH
ESRRKRFEGYDSAVIRLGVAGTIKGVDIDTSFFTGNFPPSASLEACFLASGEPDENTAWT
HHHHHHHCCCCCEEEEEEECEEEECEEECCCEEECCCCCCCCCCEEEEECCCCCCCCHHH
EVLPSVELQGNSHHYHEINNDQAFSHLRFNIYPDGGVARLRVYGVPHRDWSKVSADEQID
HHCCCEEECCCCCCCEECCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEE
LVAALNGGRSIACSDEHYGSMSNILNPGRGVNMGDGWETARRRTPGNDWVIVALGHKGEV
EEEEECCCCEEEECCHHCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCC
EKVIVDTLHFKGNYPDSCSIQGALVKGGTDSQIETQSLFWRELLPSQKLTMHAEHEFAEQ
HHEEEEHHEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHH
IKAIGPITHIRLNVFPDGGVSRLRVLGKVAR
HHHHCCEEEEEEEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA