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The map label for this gene is dapA [H]

Identifier: 66044863

GI number: 66044863

Start: 1820017

End: 1820814

Strand: Reverse

Name: dapA [H]

Synonym: Psyr_1618

Alternate gene names: 66044863

Gene position: 1820814-1820017 (Counterclockwise)

Preceding gene: 66044864

Following gene: 66044862

Centisome position: 29.88

GC content: 61.65

Gene sequence:

>798_bases
ATGTCTGGTAAAAGCATTCTGGTCCCCCTGATAACGCCTCTGAACGCGCAGGAGCAAGTCTGCGAAGCCAGCCTCGAACG
CCTTTTGGGTAGCCTCGCGCCCCATGTCGATGGCTACATTCCATGCCTGACCTCCGGAGAGGGCTGGCGGCTGTCGCGTC
AGCAATGGCTGCAGATGCTGACGCTGACCCTCAGGCACGCGGGCGAGCGCAGCGTCATCGCCGGGATCGAACGCCATTCG
ACGCAGGAGGTGCTGGACTTTGCCCTCCTGGCTCAGGATGCCGGTGCTCAAGCAGTGATGTTTACCTCACCCTTGACGCC
CGGTATCAGCCAGCAGGCGATCATCGAGCATTACCAGACCATTCATGACGCGACGCACATGGATATCTTCATGTACAACG
AGGCCGCCCTGTCGGGCAACGAAAAGTCCTTCGCCACCCTCAAGGCCATCGCGCAGTTACCGAGAGTCATTGGCCTGAAG
GACTCGCCCTCGCTGTCGCGCCCGCAGGCTCAGGTAGATGCCATTCGACAGGAGGGCGTCGACTACTTCATCGGCTGGGA
AATGCAGCTGGCCGGAGACCTGGAGTCCGACGGCAATGTGGTTTCCCTGGCCAATCTGGAACCGCTGCTGTGCCGGACAG
CGGCTGCCCGGCAGCAGCCGGCACTCAGCCAGCAAGTCGCCACGCTTAACCAGCGTTATCTGCTCAATGCCCCGGACTGG
TACGCGCATATCAAGCGCGAGCTCAGAGCCAGGGGCGTGATCAACAGCGAGCGTGTCGTCACCGAGGAGGCTGCCTGA

Upstream 100 bases:

>100_bases
CCATTCGAAAACACCATTCGACGGCAGACGTTCCCGAAGATGCTCCAGCGTCTCTATGACCAGTCCTGCGCCATGGTGAT
CAGCAACGAGGACTTTCAAC

Downstream 100 bases:

>100_bases
TGGAAGACCTGCACAAGCAACTGTTTCTGGCCAACCGTGCGCTTATCGAAAAGCGGGTGCCCATGCCACAGGCGATTCTG
GCGTTCGAGCAACACTGGAT

Product: dihydrodipicolinate synthetase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHS
TQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLK
DSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDW
YAHIKRELRARGVINSERVVTEEAA

Sequences:

>Translated_265_residues
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHS
TQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLK
DSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDW
YAHIKRELRARGVINSERVVTEEAA
>Mature_264_residues
SGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHST
QEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKD
SPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDWY
AHIKRELRARGVINSERVVTEEAA

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; first step. [C]

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI1788823, Length=190, Percent_Identity=25.7894736842105, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 840 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 29151; Mature: 29019

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQML
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEECHHHHHHHH
TLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQT
HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
IHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGV
HHCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC
DYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDW
CEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCHH
YAHIKRELRARGVINSERVVTEEAA
HHHHHHHHHHCCCCCCCCEECCCCC
>Mature Secondary Structure 
SGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQML
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEECHHHHHHHH
TLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQT
HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
IHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGV
HHCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC
DYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDW
CEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCHH
YAHIKRELRARGVINSERVVTEEAA
HHHHHHHHHHCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA