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The map label for this gene is yhjC [C]

Identifier: 66044803

GI number: 66044803

Start: 1753199

End: 1754128

Strand: Direct

Name: yhjC [C]

Synonym: Psyr_1558

Alternate gene names: 66044803

Gene position: 1753199-1754128 (Clockwise)

Preceding gene: 66044798

Following gene: 66044805

Centisome position: 28.77

GC content: 57.85

Gene sequence:

>930_bases
ATGTTTTCGTCTGAGCGACTCAAGGGTATCGATGTGTTCGTCATAGTCGCCGACATGGGCAGCTTCACGGCCGCAGCTGA
ACGGTTGAACCTGACCAACTCGGCGATCAGCAAGAGCATTGCGCGATTGGAAGGGCGTCTGCGCACCCGGTTGTTCCAGC
GCACTACGCGTCGGCTGTCGCTCACCGAGGCAGGGGAAACCTTCTACCGTACCTGCACAACGGTCCTTTCGGATCTGGAG
GAAGTCGAGATTGCGCTGACTTCAACCCAGACCGAGCCACAGGGCAAGGTGCGTATTGATTTGCCAGCTTCGTACGGGCG
TTTACATGTCTTGCCGTTGATTCTTGATTTCATGAAGCAGCACCCCAGGCTGCAGCCCCATGTGTCTTTTTCCGATCGGT
ACGTCGACCCGGTGCACGAGGGCATCGATATCGTCGTCAGGATCGGTGGTTCAGATGCCTGGCCAGCCGCCATCGCTCAC
CAGTTTTTTGGAACGCAGAAACTGATTTTTTGCGCTTCGCCCGAGTATGTAAAACAATATGGGCAGCCCAAAACGGTGTC
GGACCTCGATGACCACCAGTGCATCGGCTACGGGCAAAATGACGGTATGGCGATCCCCTGGTACTTCAAGGGTCGCCAAC
CGGGGGATATGGAGCGCAGGATCATGCATCCGCACATTGCCGTAGGAGACGGAGAGGGTGAGGTAATGGCGGTGTTGGCG
GGGCTTGGCATCGCTCAACTACCGACCTGGCTGGTCCAGGTGCATCTGAACAGCGGCAGGCTGGTGGAGGTGCTACCGGA
TCTTGCTACCGAAGGCCTTCCGATGAATCTTGTCTGGCTTCGAAGTCGCGAGGCGCTGCCAAAAGTCAGCGCTTTGGTCG
CCTACCTGGGAGCCAATCTCACGCCTGCCGGGCGAGTTGAGCGGGCTTGA

Upstream 100 bases:

>100_bases
ACGCCGAACAGGTTTTGACATAGTCTATTGGAGAAATGGCGTTTTATTTTTGCTGGTTTCTATCAAGTGAGTGGAATGGA
ATTCAATAATCGGAGTGTCT

Downstream 100 bases:

>100_bases
ATAATCATTGAATCGGGGATGATCGCAAAGCCGCTGACAACACAGAAGCGCGAAGCCGTCCCTGTCTCCTCAGCCTGACG
TGATCGAAAACTCGGGGAGG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MFSSERLKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRTCTTVLSDLE
EVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAIAH
QFFGTQKLIFCASPEYVKQYGQPKTVSDLDDHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLA
GLGIAQLPTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYLGANLTPAGRVERA

Sequences:

>Translated_309_residues
MFSSERLKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRTCTTVLSDLE
EVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAIAH
QFFGTQKLIFCASPEYVKQYGQPKTVSDLDDHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLA
GLGIAQLPTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYLGANLTPAGRVERA
>Mature_309_residues
MFSSERLKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRTCTTVLSDLE
EVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAIAH
QFFGTQKLIFCASPEYVKQYGQPKTVSDLDDHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLA
GLGIAQLPTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYLGANLTPAGRVERA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=33.5593220338983, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789440, Length=294, Percent_Identity=31.9727891156463, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=29.8013245033113, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI87081978, Length=261, Percent_Identity=35.632183908046, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787128, Length=262, Percent_Identity=33.587786259542, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=28.6184210526316, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1787589, Length=272, Percent_Identity=31.9852941176471, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789173, Length=297, Percent_Identity=25.9259259259259, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788706, Length=306, Percent_Identity=26.797385620915, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786713, Length=285, Percent_Identity=28.0701754385965, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786448, Length=268, Percent_Identity=24.6268656716418, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787601, Length=120, Percent_Identity=34.1666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786508, Length=130, Percent_Identity=36.1538461538462, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788481, Length=270, Percent_Identity=27.037037037037, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=31.6239316239316, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=286, Percent_Identity=25.1748251748252, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788297, Length=113, Percent_Identity=30.9734513274336, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34233; Mature: 34233

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSSERLKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLS
CCCCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LTEAGETFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQ
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
HPRLQPHVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAIAHQFFGTQKLIFCASPEYVKQY
CCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHHC
GQPKTVSDLDDHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLA
CCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHCCCEEEEECCCCHHHHHHH
GLGIAQLPTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYLGANL
HCCHHHCCEEEEEEECCCCCEEHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
TPAGRVERA
CCCCCCCCC
>Mature Secondary Structure
MFSSERLKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLS
CCCCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LTEAGETFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQ
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
HPRLQPHVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAIAHQFFGTQKLIFCASPEYVKQY
CCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHHC
GQPKTVSDLDDHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLA
CCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHCCCEEEEECCCCHHHHHHH
GLGIAQLPTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYLGANL
HCCHHHCCEEEEEEECCCCCEEHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
TPAGRVERA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]