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The map label for this gene is 66044767

Identifier: 66044767

GI number: 66044767

Start: 1708268

End: 1710220

Strand: Reverse

Name: 66044767

Synonym: Psyr_1520

Alternate gene names: NA

Gene position: 1710220-1708268 (Counterclockwise)

Preceding gene: 66044768

Following gene: 66044766

Centisome position: 28.07

GC content: 56.48

Gene sequence:

>1953_bases
ATGGCATCGGCCCAATTGATGAACAAGCGTCCGGTATTGCTTCGCAAAGCCATTTTCGATGGCTACGACTTCGGGCTGTC
CCTCAGTTACCTACAAGGTGCAAACAAGCTTTTGCTTCGCCGGAGGGGCTTTTTCATACGCAGGTCTGATCACCCACTGA
ACCAGTTTTGGCGTGTGCCCAAAGACAAGCTACTCGATGACCTCGATGTGCTCTATCGGGAGCTGGCAGAGCTCGCAGAT
GGCAAACACATCGAAAGCTGGCAAGCATTCAGAGACAGGATTACCTCTGCCCAGTCCGACGTGCACCGTGACGCATTCAC
CTGGGGGATGAAGTTCAGGCTCGCGCCGCTGGCGGAAGGCGGTGTGATCCTGTCGGGAGATTTTCATCCTGGTGCTGTAG
CAATCGCCAAGCGCATGCGTGGGGTGTTCCTCTCGGCGGGCAAAGCCTGGCGAGTGCAGGGCACACCAGAATTGGTTCGC
AGTAACCTGATTCTGGAACTGGGATTGGACGAAGATCAGTTCGAAATTCTGGACACGCTGCAGGAGTTGCTCGCTGACGG
GTCGGTCAAGGCGGTGAATGAGGTCACCAGTATCAGTCTGGGTGGCCACTCTCCGGAGTCGACCAAAAGCGAAGAGGAAG
TTTCAGATTCAGGTATCTACCTGGCATCTGTCCCATCCATCAAAAACACCGAGCTGACCAGTGCCGATATCGATAAGGCG
CTGGAAGGATTCTCGCTGATGGATCATCAGCCAGCAGGAATCAAGCACCTGCTGCAGCGCACGAGCGCGCTACTGGCCGA
CGACATGGGACTGGGCAAAACTCGCCAGGCTGTGATCGCCGCTGGCATACGCGCACAAGGTAAACCGGTTCTGGTTATTG
TGCTCAACAGCCTGATCATCAACTGGCAGCGCGAGATCCTGATGGTGTTTCCCCAAGCTCAGATCGCCATGCAAACCTTT
GATGCCAGTGCTGGCTGGATCATCGTGAACTACGAGAGGCTGGGTGATTTTGTCATGCACGCGAGCCGTTTCGCGGTGAT
GGTCATTGACGAGGCTCACCGACTCAAGGAACCCACTGCAGCGTGGACACGCCACGGCTTCGACATTGCTGCCCAAGTAC
AAAACCGCTACCTGTTGACGGGCACGCCAGTGCTCAATCGCGAAGCGGAGCTGCACACACTGCTGAGGCTTTCAGGCCAT
CCAATCGGACAACTGCCCCTCAATGAGTTCTGCGAGCGATTCGCCGGCAGTCCTGAGTTTCGCAAGACGCTTAGAGATGA
GATATCCGACTGGATGCTTCGTCGCCGTAAGGATGTGCTGCCCAACCTGAAGGGGAAGCAGCGGCAGACTGTACCGGTGA
TACTGAGCCAGATAGAACGTGACGAGTACAACCAGATCATGCGGAGCGACCAGCACCGATTCGCAAGGCTGGGCGCACTG
CGTCAACTGCTCGAACGCGTGAAGGTACGGATCCTGGCGGATCTGATGGCCGAGCTGGACGTCGACGACAAGGTTATCCT
CTTCTGCGAGTATCAGGAATCCGTGGCCACGTTGCGTGAGCACTGCATCAAGATGGGCGTCGGGTGCGTGACGTTGGTAG
GCAGTGACTCGCCCAAGAAACGACAGAAGGCGATTGATGCTTTCCAGCAGGATCCGGACTGCAGGGTGTTCATCGGGACC
AGGTCGGCCGCCGGAACAGGTTACAACCTGACTGCTGCGAACTATGTCTTTTTTTTGGGGCTTCCATGGACACCGGGGCT
GCAGGACCAAGCTGAGGATCGAGCTTATCGCAACGGGCAGTTGCGCATGGTTGTCGTCAAAATCCCTCTAGCTGAGGACA
CCATCGACCAGCAGCTGTGGCAGATGCTCATGGATAAGCGCGCCCTGGCCAGCGATCTGATCGATCCGGAAGCGGAGGAG
TCGAGCAAAAAAGCCCTTGCCGAGATTCTTTAA

Upstream 100 bases:

>100_bases
AGATGGCGCGTTACGCTGATGAAAAATCGGTGTTCAACATCCGCTTTGGGGAAGAGATCGTGGGCTGGGCTAACAGTTTG
TTGGACAAGGGGCTCTGAAG

Downstream 100 bases:

>100_bases
TCGGCTGTGGCAGGAGGCCATGACTTCGAGCTATGTTGCTTAGCCAAGCCGCGTGGTGTCGTTACATGCCATGCCCCTTC
AAAGCGCGCCAAAGAAAAAG

Product: SNF2-related:helicase, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 649

Protein sequence:

>650_residues
MASAQLMNKRPVLLRKAIFDGYDFGLSLSYLQGANKLLLRRRGFFIRRSDHPLNQFWRVPKDKLLDDLDVLYRELAELAD
GKHIESWQAFRDRITSAQSDVHRDAFTWGMKFRLAPLAEGGVILSGDFHPGAVAIAKRMRGVFLSAGKAWRVQGTPELVR
SNLILELGLDEDQFEILDTLQELLADGSVKAVNEVTSISLGGHSPESTKSEEEVSDSGIYLASVPSIKNTELTSADIDKA
LEGFSLMDHQPAGIKHLLQRTSALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFPQAQIAMQTF
DASAGWIIVNYERLGDFVMHASRFAVMVIDEAHRLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAELHTLLRLSGH
PIGQLPLNEFCERFAGSPEFRKTLRDEISDWMLRRRKDVLPNLKGKQRQTVPVILSQIERDEYNQIMRSDQHRFARLGAL
RQLLERVKVRILADLMAELDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGT
RSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPEAEE
SSKKALAEIL

Sequences:

>Translated_650_residues
MASAQLMNKRPVLLRKAIFDGYDFGLSLSYLQGANKLLLRRRGFFIRRSDHPLNQFWRVPKDKLLDDLDVLYRELAELAD
GKHIESWQAFRDRITSAQSDVHRDAFTWGMKFRLAPLAEGGVILSGDFHPGAVAIAKRMRGVFLSAGKAWRVQGTPELVR
SNLILELGLDEDQFEILDTLQELLADGSVKAVNEVTSISLGGHSPESTKSEEEVSDSGIYLASVPSIKNTELTSADIDKA
LEGFSLMDHQPAGIKHLLQRTSALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFPQAQIAMQTF
DASAGWIIVNYERLGDFVMHASRFAVMVIDEAHRLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAELHTLLRLSGH
PIGQLPLNEFCERFAGSPEFRKTLRDEISDWMLRRRKDVLPNLKGKQRQTVPVILSQIERDEYNQIMRSDQHRFARLGAL
RQLLERVKVRILADLMAELDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGT
RSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPEAEE
SSKKALAEIL
>Mature_649_residues
ASAQLMNKRPVLLRKAIFDGYDFGLSLSYLQGANKLLLRRRGFFIRRSDHPLNQFWRVPKDKLLDDLDVLYRELAELADG
KHIESWQAFRDRITSAQSDVHRDAFTWGMKFRLAPLAEGGVILSGDFHPGAVAIAKRMRGVFLSAGKAWRVQGTPELVRS
NLILELGLDEDQFEILDTLQELLADGSVKAVNEVTSISLGGHSPESTKSEEEVSDSGIYLASVPSIKNTELTSADIDKAL
EGFSLMDHQPAGIKHLLQRTSALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFPQAQIAMQTFD
ASAGWIIVNYERLGDFVMHASRFAVMVIDEAHRLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAELHTLLRLSGHP
IGQLPLNEFCERFAGSPEFRKTLRDEISDWMLRRRKDVLPNLKGKQRQTVPVILSQIERDEYNQIMRSDQHRFARLGALR
QLLERVKVRILADLMAELDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTR
SAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPEAEES
SKKALAEIL

Specific function: Unknown

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SWIM-type zinc finger [H]

Homologues:

Organism=Homo sapiens, GI62860046, Length=441, Percent_Identity=28.1179138321995, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI187761314, Length=440, Percent_Identity=27.2727272727273, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI21071060, Length=440, Percent_Identity=27.2727272727273, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI29244924, Length=494, Percent_Identity=26.9230769230769, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI164419749, Length=450, Percent_Identity=25.3333333333333, Blast_Score=99, Evalue=2e-20,
Organism=Homo sapiens, GI148612870, Length=460, Percent_Identity=25, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI95147342, Length=511, Percent_Identity=24.6575342465753, Blast_Score=90, Evalue=7e-18,
Organism=Homo sapiens, GI21071044, Length=462, Percent_Identity=24.6753246753247, Blast_Score=90, Evalue=8e-18,
Organism=Homo sapiens, GI40807471, Length=164, Percent_Identity=30.4878048780488, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI118421089, Length=466, Percent_Identity=25.9656652360515, Blast_Score=87, Evalue=6e-17,
Organism=Homo sapiens, GI21914927, Length=148, Percent_Identity=33.7837837837838, Blast_Score=76, Evalue=1e-13,
Organism=Homo sapiens, GI6912622, Length=155, Percent_Identity=28.3870967741935, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI216548193, Length=149, Percent_Identity=30.8724832214765, Blast_Score=71, Evalue=4e-12,
Organism=Homo sapiens, GI216548186, Length=149, Percent_Identity=30.8724832214765, Blast_Score=71, Evalue=4e-12,
Organism=Homo sapiens, GI38708321, Length=254, Percent_Identity=25.5905511811024, Blast_Score=66, Evalue=9e-11,
Organism=Homo sapiens, GI190358534, Length=152, Percent_Identity=30.2631578947368, Blast_Score=66, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17552194, Length=442, Percent_Identity=27.6018099547511, Blast_Score=141, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI25148958, Length=442, Percent_Identity=27.6018099547511, Blast_Score=141, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI25148960, Length=442, Percent_Identity=27.6018099547511, Blast_Score=141, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71995707, Length=473, Percent_Identity=25.369978858351, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI25144179, Length=451, Percent_Identity=25.2771618625277, Blast_Score=99, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71991518, Length=470, Percent_Identity=25.3191489361702, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17508659, Length=152, Percent_Identity=32.8947368421053, Blast_Score=80, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17540630, Length=141, Percent_Identity=30.4964539007092, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193203249, Length=141, Percent_Identity=28.3687943262411, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115534248, Length=149, Percent_Identity=29.5302013422819, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17561718, Length=149, Percent_Identity=29.5302013422819, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6325175, Length=494, Percent_Identity=23.6842105263158, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6324879, Length=481, Percent_Identity=25.7796257796258, Blast_Score=95, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6319722, Length=516, Percent_Identity=24.4186046511628, Blast_Score=92, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6321275, Length=481, Percent_Identity=23.7006237006237, Blast_Score=91, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6324765, Length=136, Percent_Identity=27.2058823529412, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322495, Length=349, Percent_Identity=24.6418338108883, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321289, Length=167, Percent_Identity=27.5449101796407, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319300, Length=216, Percent_Identity=27.3148148148148, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6320541, Length=255, Percent_Identity=28.2352941176471, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6319590, Length=125, Percent_Identity=32, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581780, Length=423, Percent_Identity=27.1867612293144, Blast_Score=138, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24644932, Length=143, Percent_Identity=34.965034965035, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI17136368, Length=156, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281361297, Length=158, Percent_Identity=26.5822784810127, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000330
- InterPro:   IPR007527 [H]

Pfam domain/function: PF00271 Helicase_C; PF00176 SNF2_N; PF04434 SWIM [H]

EC number: NA

Molecular weight: Translated: 73064; Mature: 72933

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00690 DEAH_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASAQLMNKRPVLLRKAIFDGYDFGLSLSYLQGANKLLLRRRGFFIRRSDHPLNQFWRVP
CCCCHHCCCCCHHHHHHHHCCCCCCCEEHHHHCHHHHHHHHCCCEEECCCCCHHHHHCCC
KDKLLDDLDVLYRELAELADGKHIESWQAFRDRITSAQSDVHRDAFTWGMKFRLAPLAEG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
GVILSGDFHPGAVAIAKRMRGVFLSAGKAWRVQGTPELVRSNLILELGLDEDQFEILDTL
CEEEECCCCCHHHHHHHHHHHHEEECCCEEEECCCHHHHHCCEEEEECCCCHHHHHHHHH
QELLADGSVKAVNEVTSISLGGHSPESTKSEEEVSDSGIYLASVPSIKNTELTSADIDKA
HHHHCCCCHHHHHHHHEEEECCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHH
LEGFSLMDHQPAGIKHLLQRTSALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLII
HHCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHH
NWQREILMVFPQAQIAMQTFDASAGWIIVNYERLGDFVMHASRFAVMVIDEAHRLKEPTA
HCCCEEEEEECCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCEEEEEECCHHHCCCCHH
AWTRHGFDIAAQVQNRYLLTGTPVLNREAELHTLLRLSGHPIGQLPLNEFCERFAGSPEF
HHHHCCCHHEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHH
RKTLRDEISDWMLRRRKDVLPNLKGKQRQTVPVILSQIERDEYNQIMRSDQHRFARLGAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQLLERVKVRILADLMAELDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKK
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCHH
RQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQ
HHHHHHHHHCCCCCEEEEECCCCCCCCCEEEHEEEEEEEECCCCCCCCCHHHHHHHCCCC
LRMVVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPEAEESSKKALAEIL
EEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure 
ASAQLMNKRPVLLRKAIFDGYDFGLSLSYLQGANKLLLRRRGFFIRRSDHPLNQFWRVP
CCCHHCCCCCHHHHHHHHCCCCCCCEEHHHHCHHHHHHHHCCCEEECCCCCHHHHHCCC
KDKLLDDLDVLYRELAELADGKHIESWQAFRDRITSAQSDVHRDAFTWGMKFRLAPLAEG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
GVILSGDFHPGAVAIAKRMRGVFLSAGKAWRVQGTPELVRSNLILELGLDEDQFEILDTL
CEEEECCCCCHHHHHHHHHHHHEEECCCEEEECCCHHHHHCCEEEEECCCCHHHHHHHHH
QELLADGSVKAVNEVTSISLGGHSPESTKSEEEVSDSGIYLASVPSIKNTELTSADIDKA
HHHHCCCCHHHHHHHHEEEECCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHH
LEGFSLMDHQPAGIKHLLQRTSALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLII
HHCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHH
NWQREILMVFPQAQIAMQTFDASAGWIIVNYERLGDFVMHASRFAVMVIDEAHRLKEPTA
HCCCEEEEEECCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCEEEEEECCHHHCCCCHH
AWTRHGFDIAAQVQNRYLLTGTPVLNREAELHTLLRLSGHPIGQLPLNEFCERFAGSPEF
HHHHCCCHHEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHH
RKTLRDEISDWMLRRRKDVLPNLKGKQRQTVPVILSQIERDEYNQIMRSDQHRFARLGAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQLLERVKVRILADLMAELDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKK
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCHH
RQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQ
HHHHHHHHHCCCCCEEEEECCCCCCCCCEEEHEEEEEEEECCCCCCCCCHHHHHHHCCCC
LRMVVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPEAEESSKKALAEIL
EEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]