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The map label for this gene is xerD [H]

Identifier: 66044755

GI number: 66044755

Start: 1694121

End: 1695080

Strand: Direct

Name: xerD [H]

Synonym: Psyr_1508

Alternate gene names: 66044755

Gene position: 1694121-1695080 (Clockwise)

Preceding gene: 66044754

Following gene: 66044782

Centisome position: 27.8

GC content: 61.46

Gene sequence:

>960_bases
ATGCCGGGAGAATTGATCTCAATTGAGGATGGCGGACGTCGGCTTACGGCGGCGGAGTTCCAGCAACTGACGGCTGTACC
CTCAGCCGTGGAGTGGTTTGCCAATATCGATAATCCACGTACCCGCCGGGCGTATCAGATCGACCTACAAGACTTCTGCA
GTTTCGTCGGCTTGGCCGGGGCCGAAGAGTTTCGGGCCGTGACGCGCGCACATGTCCTGGCCTGGCGCGCTCGGTTGGAG
AAGCGTGGTCTGGCCGGAGCAACGATCCGGCGTAAACTCGCCGCGCTTGCCAGCCTGTTTGATCATCTGCTCGAGAACAA
TGCAGTGGCAGGGGGCAATCCGGTCCACGGCGTCAAGCGGCCCCGGATCGAAAGCAACGAAGGGAAGACGCCCGCGCTCG
CGGACCACCAGGCCAAGGCGCTTCTCGATGCGCCGCCGGCTGACAGCCTCAAGGGACTACGAGATCGTGCTGTGCTGGCC
GTGCTGCTGTACCACGGCCTGCGCCGGGAGGAGGGCGCGCAGTTGAAAACCAGCGACTTGCAGGAGCGACGGGGCATTAA
GCACCTGCGGGTGAACGGCAAAGGCGGCAAGCTGCGCTGGCTACCGCTGCACCCCGTGGCCGCCGAACGTATCTACGCAT
ATATGGAAAAGGATCTTGAGCGAGGAGCAGGGAATGGGTCGCTGTTTAGGTCACTACGAGGTCGCGCCTCTGGTACCGGG
CTGAGCGCCGATGGCATTTATAAGATCGTGTGTCATTGGGCGATGTCTGCCGGCATCAAGGTTGATGGTCTGGGCGTCCA
TGGTTTGCGGGCCACGGCGGCTACAAACGCGCTTGAGCATGACGCGGACATTGCCAAGGTGCAGATCTGGCTGGGGCACG
CAAACATCAGCACGACGCGTTTGTATGATCGGCGCGGCCAGCGACCGGAAGACTCTCCGACGTTTAAAGTCAAATACTGA

Upstream 100 bases:

>100_bases
ACCTAGTGCCTGAGCCGATCCATGAGCGCTTGCAGCGTGAGCTCATGGCATCGGATGAGTGGCCTGCTATTAAGGCTAAA
TGGGACGCGGAGTACGGTCC

Downstream 100 bases:

>100_bases
GAACCGCGGATTGTGGGCCACCCTTCAACCACTACCACTCGTCGGAGAATTAAGGTTGGTAATTACTGCTCACTCCAAAT
CTCGAAATTTGACGGAAAGG

Product: Phage integrase:Phage integrase, N-terminal SAM-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MPGELISIEDGGRRLTAAEFQQLTAVPSAVEWFANIDNPRTRRAYQIDLQDFCSFVGLAGAEEFRAVTRAHVLAWRARLE
KRGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALADHQAKALLDAPPADSLKGLRDRAVLA
VLLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKGGKLRWLPLHPVAAERIYAYMEKDLERGAGNGSLFRSLRGRASGTG
LSADGIYKIVCHWAMSAGIKVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLYDRRGQRPEDSPTFKVKY

Sequences:

>Translated_319_residues
MPGELISIEDGGRRLTAAEFQQLTAVPSAVEWFANIDNPRTRRAYQIDLQDFCSFVGLAGAEEFRAVTRAHVLAWRARLE
KRGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALADHQAKALLDAPPADSLKGLRDRAVLA
VLLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKGGKLRWLPLHPVAAERIYAYMEKDLERGAGNGSLFRSLRGRASGTG
LSADGIYKIVCHWAMSAGIKVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLYDRRGQRPEDSPTFKVKY
>Mature_318_residues
PGELISIEDGGRRLTAAEFQQLTAVPSAVEWFANIDNPRTRRAYQIDLQDFCSFVGLAGAEEFRAVTRAHVLAWRARLEK
RGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALADHQAKALLDAPPADSLKGLRDRAVLAV
LLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKGGKLRWLPLHPVAAERIYAYMEKDLERGAGNGSLFRSLRGRASGTGL
SADGIYKIVCHWAMSAGIKVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLYDRRGQRPEDSPTFKVKY

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=267, Percent_Identity=31.8352059925094, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789261, Length=223, Percent_Identity=33.6322869955157, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34981; Mature: 34850

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGELISIEDGGRRLTAAEFQQLTAVPSAVEWFANIDNPRTRRAYQIDLQDFCSFVGLAG
CCCCEEEECCCCCEEHHHHHHHHHHCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHCCCC
AEEFRAVTRAHVLAWRARLEKRGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PRIESNEGKTPALADHQAKALLDAPPADSLKGLRDRAVLAVLLYHGLRREEGAQLKTSDL
CCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
QERRGIKHLRVNGKGGKLRWLPLHPVAAERIYAYMEKDLERGAGNGSLFRSLRGRASGTG
HHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
LSADGIYKIVCHWAMSAGIKVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTR
CCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHH
LYDRRGQRPEDSPTFKVKY
HHHHCCCCCCCCCCEEEEC
>Mature Secondary Structure 
PGELISIEDGGRRLTAAEFQQLTAVPSAVEWFANIDNPRTRRAYQIDLQDFCSFVGLAG
CCCEEEECCCCCEEHHHHHHHHHHCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHCCCC
AEEFRAVTRAHVLAWRARLEKRGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PRIESNEGKTPALADHQAKALLDAPPADSLKGLRDRAVLAVLLYHGLRREEGAQLKTSDL
CCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
QERRGIKHLRVNGKGGKLRWLPLHPVAAERIYAYMEKDLERGAGNGSLFRSLRGRASGTG
HHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
LSADGIYKIVCHWAMSAGIKVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTR
CCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHH
LYDRRGQRPEDSPTFKVKY
HHHHCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 10537218; 10498718 [H]