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The map label for this gene is rodZ [H]

Identifier: 66044495

GI number: 66044495

Start: 1402337

End: 1403341

Strand: Direct

Name: rodZ [H]

Synonym: Psyr_1247

Alternate gene names: 66044495

Gene position: 1402337-1403341 (Clockwise)

Preceding gene: 66044494

Following gene: 66044496

Centisome position: 23.01

GC content: 62.09

Gene sequence:

>1005_bases
ATGAAAGCGGCGCATCCCGAAGTTGTAGCAACCAATCGCGTGAATCCTGGAGAAACCCTGCGCCAGGCCCGCGAGAGCAG
GAGCTGGTCGCTGCCAGATGTGGCCTTGAGATTGAATCTCACCGTGACCTCCCTGACCAATCTGGAGAACGGCCAGTTTG
AAAAGCTGCCTGGGCATACGTTTGCCCGGGGTTATGTGCGTGCCTACGCCAAACTGCTTGACCTTGATCAGGCGGCGCTG
GTCGAGCAGTTCGACCAGTTCACCGGCACCGACGGTAAAGGCAGTTCGGTTCACGCGCTGGGCCGTATCGAAGAGCCGGT
CAGGCTGTCGCACAATATTCTGCGTATCGTCAGCCTGCTGTTGCTGGTGATTCTGGTCGGCGGCGGTTTCTTCTGGTGGC
AGGATCAGGCGACCTTGCGCGGCAAGGATCAGTCCGGGCTGAACATGGAGCACGTCGAAGTCGAAAGCGCGGATGGCACC
ACGCAGATTCACCCGCTTGACGAACCGGAAGAGCCTGCTGTAGCTGAAACGCCTGCCTCTGGACAAACTTCCTTGCCGTT
GAATACCGGTGCGCCTGCCAGTGAGGCGCCCGCTGCTGCGCCTGCGGCCCCGGCTTCCAGCGTCACAGGTCACGCAACCG
CACAACCACAGACACCTGCTGCTGCCACGCCACCGGCGAGCGCGCCTCAAGCACCCGTTGCTGCGCCGAACGTGCCGTCG
ATGCCGACTGCACCTGCCGAGCAGCCAGCGCCTGTTGTGGCGGGTGCCGGTCAGGTGACCGTACAGTTCGTCGCCGATTG
CTGGACCCAGGTCACTGACGGAAACGGCAAAGTGCTGGTCAGCGGTCTCAAGCGCAAGGGCGAGAGCCTGGATGTCAACG
GCAAGCCGCCGTTGACCCTGCGTCTGGGCTACGCGCGCGGTGCGCAGGTCAGCTACAACGGTCAGCCTGTGGATGTAGCA
CCTTTTACCAGCGGCGAAACTGCTCGCCTGAAGCTAGGGCAATAA

Upstream 100 bases:

>100_bases
AGATATATGATGATCGTAACAAGGCGGCCAGCTTTGGCCTGCTGTTGAAAAGACTCTATCCCGGTACGCCGGAATATCAG
CAATACCTGTCGGAGCAATG

Downstream 100 bases:

>100_bases
GTCATGCACGGCGAATCTCCAATCAAGCGTCGCGAATCCCGGAAAATATGGGTCGGTTCCGTACCGGTAGGCGGTGATGC
GCCGATCGCGGTGCAGAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKAAHPEVVATNRVNPGETLRQARESRSWSLPDVALRLNLTVTSLTNLENGQFEKLPGHTFARGYVRAYAKLLDLDQAAL
VEQFDQFTGTDGKGSSVHALGRIEEPVRLSHNILRIVSLLLLVILVGGGFFWWQDQATLRGKDQSGLNMEHVEVESADGT
TQIHPLDEPEEPAVAETPASGQTSLPLNTGAPASEAPAAAPAAPASSVTGHATAQPQTPAAATPPASAPQAPVAAPNVPS
MPTAPAEQPAPVVAGAGQVTVQFVADCWTQVTDGNGKVLVSGLKRKGESLDVNGKPPLTLRLGYARGAQVSYNGQPVDVA
PFTSGETARLKLGQ

Sequences:

>Translated_334_residues
MKAAHPEVVATNRVNPGETLRQARESRSWSLPDVALRLNLTVTSLTNLENGQFEKLPGHTFARGYVRAYAKLLDLDQAAL
VEQFDQFTGTDGKGSSVHALGRIEEPVRLSHNILRIVSLLLLVILVGGGFFWWQDQATLRGKDQSGLNMEHVEVESADGT
TQIHPLDEPEEPAVAETPASGQTSLPLNTGAPASEAPAAAPAAPASSVTGHATAQPQTPAAATPPASAPQAPVAAPNVPS
MPTAPAEQPAPVVAGAGQVTVQFVADCWTQVTDGNGKVLVSGLKRKGESLDVNGKPPLTLRLGYARGAQVSYNGQPVDVA
PFTSGETARLKLGQ
>Mature_334_residues
MKAAHPEVVATNRVNPGETLRQARESRSWSLPDVALRLNLTVTSLTNLENGQFEKLPGHTFARGYVRAYAKLLDLDQAAL
VEQFDQFTGTDGKGSSVHALGRIEEPVRLSHNILRIVSLLLLVILVGGGFFWWQDQATLRGKDQSGLNMEHVEVESADGT
TQIHPLDEPEEPAVAETPASGQTSLPLNTGAPASEAPAAAPAAPASSVTGHATAQPQTPAAATPPASAPQAPVAAPNVPS
MPTAPAEQPAPVVAGAGQVTVQFVADCWTQVTDGNGKVLVSGLKRKGESLDVNGKPPLTLRLGYARGAQVSYNGQPVDVA
PFTSGETARLKLGQ

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=319, Percent_Identity=28.5266457680251, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 34953; Mature: 34953

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50943 HTH_CROC1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAAHPEVVATNRVNPGETLRQARESRSWSLPDVALRLNLTVTSLTNLENGQFEKLPGHT
CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCEECCCCCH
FARGYVRAYAKLLDLDQAALVEQFDQFTGTDGKGSSVHALGRIEEPVRLSHNILRIVSLL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
LLVILVGGGFFWWQDQATLRGKDQSGLNMEHVEVESADGTTQIHPLDEPEEPAVAETPAS
HHHHHHCCCEEEEECCCEECCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCC
GQTSLPLNTGAPASEAPAAAPAAPASSVTGHATAQPQTPAAATPPASAPQAPVAAPNVPS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MPTAPAEQPAPVVAGAGQVTVQFVADCWTQVTDGNGKVLVSGLKRKGESLDVNGKPPLTL
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHEECCCCEEEEEEHHCCCCEECCCCCCCEEE
RLGYARGAQVSYNGQPVDVAPFTSGETARLKLGQ
EECCCCCCEEEECCCCEEECCCCCCCEEEEECCC
>Mature Secondary Structure
MKAAHPEVVATNRVNPGETLRQARESRSWSLPDVALRLNLTVTSLTNLENGQFEKLPGHT
CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCEECCCCCH
FARGYVRAYAKLLDLDQAALVEQFDQFTGTDGKGSSVHALGRIEEPVRLSHNILRIVSLL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
LLVILVGGGFFWWQDQATLRGKDQSGLNMEHVEVESADGTTQIHPLDEPEEPAVAETPAS
HHHHHHCCCEEEEECCCEECCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCC
GQTSLPLNTGAPASEAPAAAPAAPASSVTGHATAQPQTPAAATPPASAPQAPVAAPNVPS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MPTAPAEQPAPVVAGAGQVTVQFVADCWTQVTDGNGKVLVSGLKRKGESLDVNGKPPLTL
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHEECCCCEEEEEEHHCCCCEECCCCCCCEEE
RLGYARGAQVSYNGQPVDVAPFTSGETARLKLGQ
EECCCCCCEEEECCCCEEECCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA