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The map label for this gene is ycfJ [H]

Identifier: 66044480

GI number: 66044480

Start: 1390899

End: 1391438

Strand: Direct

Name: ycfJ [H]

Synonym: Psyr_1232

Alternate gene names: 66044480

Gene position: 1390899-1391438 (Clockwise)

Preceding gene: 66044479

Following gene: 66044482

Centisome position: 22.83

GC content: 56.85

Gene sequence:

>540_bases
GTGAACAAGTCTATGCTTGTTGGTGCTGTGTTAGGTGCTGCTGTCGTGACTGCTGGCGGCGCCGTTGCCACCTATAGCTT
GGTCAAGGGTGGTCCTGAGTATGCGGATGTATTGGCGGTAGAGCCGATCAACCAGCAGATCAAAACCCCCCGTGAAGTTT
GCAAGGACGTAACCGTTACCCGTCAGGCGCCGGTCAAGGACCAGCATCAGATCGTCGGTAGCGTGATTGGCGCGGTTGCC
GGTGGTTTGCTCGGCAATCAGGTCGGCGGTGGTAATGGCAAGAAAATCGCCACGGTCGCGGGCGCGCTCGGCGGTGGGTA
TGCCGGTAACAAGGTTCAGGAAGGCATGCAGGAGCGTGACACCTACACCACTACGCAGAACCGCTGCACGACGGTCAACG
ATGTGAGCGACAAGGTTGTGGGCTACAACGTCAAATACAAGTTGAATGAGAAGGTCGGTCAGGTTCGTATGGAGCGTGAT
CCGGGTAGCCAGATTCCGGTCGACAAGAACGGTCAGCTGATATTGGGTCAGGCGCAATAA

Upstream 100 bases:

>100_bases
ATCATAAAAAAGGCGCGAGTGCTGAACTCGCGCCTTTTTTTATGCTCCAAGGCTAGGCATTGCGCAGCCATGCTGCGTTT
CGATTGGTCAGGAGGTTCAA

Downstream 100 bases:

>100_bases
CGCCAGCCGCTGAGTTTCACAAGACATAAAAAAACCGGCTTGCGCCGGTTTTTTTATGCCTGCCGCTTAACGCTTGAGCG
AAGCTGGCAGGTGCGGTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNKSMLVGAVLGAAVVTAGGAVATYSLVKGGPEYADVLAVEPINQQIKTPREVCKDVTVTRQAPVKDQHQIVGSVIGAVA
GGLLGNQVGGGNGKKIATVAGALGGGYAGNKVQEGMQERDTYTTTQNRCTTVNDVSDKVVGYNVKYKLNEKVGQVRMERD
PGSQIPVDKNGQLILGQAQ

Sequences:

>Translated_179_residues
MNKSMLVGAVLGAAVVTAGGAVATYSLVKGGPEYADVLAVEPINQQIKTPREVCKDVTVTRQAPVKDQHQIVGSVIGAVA
GGLLGNQVGGGNGKKIATVAGALGGGYAGNKVQEGMQERDTYTTTQNRCTTVNDVSDKVVGYNVKYKLNEKVGQVRMERD
PGSQIPVDKNGQLILGQAQ
>Mature_179_residues
MNKSMLVGAVLGAAVVTAGGAVATYSLVKGGPEYADVLAVEPINQQIKTPREVCKDVTVTRQAPVKDQHQIVGSVIGAVA
GGLLGNQVGGGNGKKIATVAGALGGGYAGNKVQEGMQERDTYTTTQNRCTTVNDVSDKVVGYNVKYKLNEKVGQVRMERD
PGSQIPVDKNGQLILGQAQ

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=175, Percent_Identity=57.1428571428571, Blast_Score=204, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 18581; Mature: 18581

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSMLVGAVLGAAVVTAGGAVATYSLVKGGPEYADVLAVEPINQQIKTPREVCKDVTVT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEECCCCHHHCCHHHHHHCCCCC
RQAPVKDQHQIVGSVIGAVAGGLLGNQVGGGNGKKIATVAGALGGGYAGNKVQEGMQERD
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHC
TYTTTQNRCTTVNDVSDKVVGYNVKYKLNEKVGQVRMERDPGSQIPVDKNGQLILGQAQ
CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MNKSMLVGAVLGAAVVTAGGAVATYSLVKGGPEYADVLAVEPINQQIKTPREVCKDVTVT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEECCCCHHHCCHHHHHHCCCCC
RQAPVKDQHQIVGSVIGAVAGGLLGNQVGGGNGKKIATVAGALGGGYAGNKVQEGMQERD
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHC
TYTTTQNRCTTVNDVSDKVVGYNVKYKLNEKVGQVRMERDPGSQIPVDKNGQLILGQAQ
CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]