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The map label for this gene is hrpL [H]

Identifier: 66044468

GI number: 66044468

Start: 1374846

End: 1375400

Strand: Direct

Name: hrpL [H]

Synonym: Psyr_1217

Alternate gene names: 66044468

Gene position: 1374846-1375400 (Clockwise)

Preceding gene: 66044453

Following gene: 66044469

Centisome position: 22.56

GC content: 55.68

Gene sequence:

>555_bases
ATGCTCCCGAATCTTGTGATCCTTGATGCAACCGAACCACGCCAACCATCGTCGTCCGCCGGTATCCGGCAATTGACGGC
CGATCAGGTCCAGATGCTCAGAGCGTTCATCCAGAAGCGGGTGAAGAACGCTGATGATGTGGATGACATCCTGCAATGCG
TGTTTCTCGAGGCGTTACGCAATGAGCACAAGTTTCAGCACGCCAGCAAACCGCAAACCTGGTTATGTGGCATTGCGCTG
AATCTGATCCGCAATCACTTCCGCAAAATGTATCGCCAGCCCTATCAGGAAAGCTGGGAAGACGAAGTCCATACCGATCT
GGAGTGGAACGGCGATATCACCCATCAGGTAGACGGTCACCGACAGCTGGCACGCGTCATAGAGGCCATCGATTGCCTGC
CGACGAACATGCAGAAGGTTCTGGAAGTTTCGCTGGAAATGGACGGCAATTATCAGGAAACCGCCAACACGCTCGGTGTT
CCGATCGGCACTGTCCGCTCCCGACTGTCCCGGGCGCGGGTGCAGCTCAAGCAACACATAGACCCGTTCGCCTGA

Upstream 100 bases:

>100_bases
CATATTTTAAAATATTTATACAAATCATGTGGTTATGATTATTTTTGGATTGGCATGGTTATCGCTATAGGACTTGCACT
CCATCAATTGAGGCAAGCCC

Downstream 100 bases:

>100_bases
GTGGTCATCTATCTGGAACCAACTTGCACGTAAAACCACACAGTTGCCATCCCACACCACTTGGATGGCAACCATGCGTA
TATCCAGTTCTCCCAGTCCT

Product: sigma-70 region 2:sigma-70 region 4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MLPNLVILDATEPRQPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIAL
NLIRNHFRKMYRQPYQESWEDEVHTDLEWNGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGV
PIGTVRSRLSRARVQLKQHIDPFA

Sequences:

>Translated_184_residues
MLPNLVILDATEPRQPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIAL
NLIRNHFRKMYRQPYQESWEDEVHTDLEWNGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGV
PIGTVRSRLSRARVQLKQHIDPFA
>Mature_184_residues
MLPNLVILDATEPRQPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIAL
NLIRNHFRKMYRQPYQESWEDEVHTDLEWNGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGV
PIGTVRSRLSRARVQLKQHIDPFA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in the activation of hprD as well as other hrp loci which are involved in plant pathogenic

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=157, Percent_Identity=28.6624203821656, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21195; Mature: 21195

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPNLVILDATEPRQPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALR
CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLEWNGDITHQVDGH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHH
RQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQHI
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
DPFA
CCCC
>Mature Secondary Structure
MLPNLVILDATEPRQPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALR
CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLEWNGDITHQVDGH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHH
RQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQHI
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
DPFA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8106313 [H]