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The map label for this gene is oprB [H]

Identifier: 66044368

GI number: 66044368

Start: 1265737

End: 1267098

Strand: Direct

Name: oprB [H]

Synonym: Psyr_1117

Alternate gene names: 66044368

Gene position: 1265737-1267098 (Clockwise)

Preceding gene: 66044367

Following gene: 66044369

Centisome position: 20.77

GC content: 57.27

Gene sequence:

>1362_bases
ATGAAGAAGATCAACAAAGGTAAATCGCTTTCCCGGCTCCAGTTGGTATGCAAGCTGTCGGCGTTGGGTGCAATGGGTCT
GGCCGGCAGCGTTCACGCCGCCGAGCCATTTGCCGCTGATTCACCCTGGATGACGGGTGACTGGGGTGGCAAGCGCACCG
AGTTGCTGGACAAGGGTTATGACTTCTCGCTGGAATACGTTTCCGAGATGGCCAGCAACCTGAAGGGCGGCTACAACGAT
GACACCACCGGTCGTTACAGCGACCAGTTCGCGCTGGGCATGAAAGTCGATTTGCAGAAGGTGCTGGGCTGGCAAGACGC
GGAGTTCAAGCTGGCAATCACCGAACGTAGCGGTCGCAATATCTCCAATGACCGTATCGGCGATCCTCGCGCCGGTACAC
TCAGCTCCTCCCAGGAAGTCTGGGGCCGTGGTCAGACCTGGCGCCTGACGCAGATGTGGATCAAGCAGAAGTACTTCGAC
GGCGCGCTGGACGTCAAGGCCGGTCGCTTTGGTCCGGGCGAAGACTTCAACAGCTTCCCGTGCGACTTCCAGAACCTGTC
GTTCTGCGGCTCGCAGGTCGGTAACTACGTTAATACCTGGTACAACTGGCCTATCAGCCAGTGGGCGTTGCGCATCAAGT
ACAACATCACGCCTGAAGTCTATGCCCAGGTTGGCGTGTACGAGCAGAACCCGTCCAACCTGGAAACAGGCAACGGCTTC
AAACTCAGCGGCAGTGGCACCGAAGGCATGATTCTGCCGGTCGAACTGGTCTGGACTCCGTCCTTCAACTCGTTGCCCGG
TGAGTACCGTGTCGGTTACTACAAGAGCACGCCAAACGCCAACGATGTCTATGAAGACGTGAACGGTCAGCCGCAGGCCT
TGACTGGCGCAGCGTTCAAGTCACACAGCAGCAAGCATGGCTGGTGGGTCGTGGCTCAGCAACAACTGACCACTCATGAC
GGCGACGCCTCGCGCGGCCTGAGCATCTTTGCCAACGCCACCGTGCATGACAAGGCGACCAACTTCGTCGACAACTACCA
GCAGATCGGTTTCACGTACAAAGGTCCGTTCAACTCGCGTCCGAAAGATGACATCGGTATCGGTTTTGCCCGTATCCACG
TCAACGACGATGTGCAGGATCGCGTGCGTCTGGCCAACCAGATCAGCGGTATCAACGACTACGACAACCCTGGCTTTCTG
CCGGTTCAGAGCACTGAGTACAACTCTGAAATCTACTACGGCTTCCATGTCACCAACTGGCTGACCGTGCGTCCCAACCT
GCAGTACATCAAGCATCCTGGTGGCGTAGATCAGGTTGATGATGCGCTGGTAGCGGGCATCAAGATCCAGTCGAAGTTCT
GA

Upstream 100 bases:

>100_bases
CCGTTGGCTGCCAAAACGCACGGCCGATCAGCGAATACAAGGCAGTGAATGAAGCAACATGTCTACCAAAGCTAATAACA
ATAAAACGAGGATTGATGGG

Downstream 100 bases:

>100_bases
GTATTGACTGACGCGTAACGCGATCAAGGGTCGTGTGTGCTTTGCGGGCAGCCTGGCTGCCCGTTTTTTTATGGCTTGAT
CCTTTTATTTTTCAGGGACG

Product: carbohydrate-selective porin OprB

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MKKINKGKSLSRLQLVCKLSALGAMGLAGSVHAAEPFAADSPWMTGDWGGKRTELLDKGYDFSLEYVSEMASNLKGGYND
DTTGRYSDQFALGMKVDLQKVLGWQDAEFKLAITERSGRNISNDRIGDPRAGTLSSSQEVWGRGQTWRLTQMWIKQKYFD
GALDVKAGRFGPGEDFNSFPCDFQNLSFCGSQVGNYVNTWYNWPISQWALRIKYNITPEVYAQVGVYEQNPSNLETGNGF
KLSGSGTEGMILPVELVWTPSFNSLPGEYRVGYYKSTPNANDVYEDVNGQPQALTGAAFKSHSSKHGWWVVAQQQLTTHD
GDASRGLSIFANATVHDKATNFVDNYQQIGFTYKGPFNSRPKDDIGIGFARIHVNDDVQDRVRLANQISGINDYDNPGFL
PVQSTEYNSEIYYGFHVTNWLTVRPNLQYIKHPGGVDQVDDALVAGIKIQSKF

Sequences:

>Translated_453_residues
MKKINKGKSLSRLQLVCKLSALGAMGLAGSVHAAEPFAADSPWMTGDWGGKRTELLDKGYDFSLEYVSEMASNLKGGYND
DTTGRYSDQFALGMKVDLQKVLGWQDAEFKLAITERSGRNISNDRIGDPRAGTLSSSQEVWGRGQTWRLTQMWIKQKYFD
GALDVKAGRFGPGEDFNSFPCDFQNLSFCGSQVGNYVNTWYNWPISQWALRIKYNITPEVYAQVGVYEQNPSNLETGNGF
KLSGSGTEGMILPVELVWTPSFNSLPGEYRVGYYKSTPNANDVYEDVNGQPQALTGAAFKSHSSKHGWWVVAQQQLTTHD
GDASRGLSIFANATVHDKATNFVDNYQQIGFTYKGPFNSRPKDDIGIGFARIHVNDDVQDRVRLANQISGINDYDNPGFL
PVQSTEYNSEIYYGFHVTNWLTVRPNLQYIKHPGGVDQVDDALVAGIKIQSKF
>Mature_453_residues
MKKINKGKSLSRLQLVCKLSALGAMGLAGSVHAAEPFAADSPWMTGDWGGKRTELLDKGYDFSLEYVSEMASNLKGGYND
DTTGRYSDQFALGMKVDLQKVLGWQDAEFKLAITERSGRNISNDRIGDPRAGTLSSSQEVWGRGQTWRLTQMWIKQKYFD
GALDVKAGRFGPGEDFNSFPCDFQNLSFCGSQVGNYVNTWYNWPISQWALRIKYNITPEVYAQVGVYEQNPSNLETGNGF
KLSGSGTEGMILPVELVWTPSFNSLPGEYRVGYYKSTPNANDVYEDVNGQPQALTGAAFKSHSSKHGWWVVAQQQLTTHD
GDASRGLSIFANATVHDKATNFVDNYQQIGFTYKGPFNSRPKDDIGIGFARIHVNDDVQDRVRLANQISGINDYDNPGFL
PVQSTEYNSEIYYGFHVTNWLTVRPNLQYIKHPGGVDQVDDALVAGIKIQSKF

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 50433; Mature: 50433

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKINKGKSLSRLQLVCKLSALGAMGLAGSVHAAEPFAADSPWMTGDWGGKRTELLDKGY
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHCCC
DFSLEYVSEMASNLKGGYNDDTTGRYSDQFALGMKVDLQKVLGWQDAEFKLAITERSGRN
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECEEEHHHHCCCCCCCEEEEEEECCCCC
ISNDRIGDPRAGTLSSSQEVWGRGQTWRLTQMWIKQKYFDGALDVKAGRFGPGEDFNSFP
CCCCCCCCCCCCCCCCCHHHHCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
CDFQNLSFCGSQVGNYVNTWYNWPISQWALRIKYNITPEVYAQVGVYEQNPSNLETGNGF
CCCCHHHHHHHHHCHHHHHHCCCCHHHEEEEEEEECCHHHHHEECEEECCCCCCCCCCCE
KLSGSGTEGMILPVELVWTPSFNSLPGEYRVGYYKSTPNANDVYEDVNGQPQALTGAAFK
EEECCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEHHHHH
SHSSKHGWWVVAQQQLTTHDGDASRGLSIFANATVHDKATNFVDNYQQIGFTYKGPFNSR
CCCCCCCEEEEEECEEECCCCCCCCCEEEEEECEECCHHHHHHHHHHHCCEEECCCCCCC
PKDDIGIGFARIHVNDDVQDRVRLANQISGINDYDNPGFLPVQSTEYNSEIYYGFHVTNW
CCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEE
LTVRPNLQYIKHPGGVDQVDDALVAGIKIQSKF
EEECCCCCEEECCCCCCHHHHHHHCCEEEECCC
>Mature Secondary Structure
MKKINKGKSLSRLQLVCKLSALGAMGLAGSVHAAEPFAADSPWMTGDWGGKRTELLDKGY
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHCCC
DFSLEYVSEMASNLKGGYNDDTTGRYSDQFALGMKVDLQKVLGWQDAEFKLAITERSGRN
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECEEEHHHHCCCCCCCEEEEEEECCCCC
ISNDRIGDPRAGTLSSSQEVWGRGQTWRLTQMWIKQKYFDGALDVKAGRFGPGEDFNSFP
CCCCCCCCCCCCCCCCCHHHHCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
CDFQNLSFCGSQVGNYVNTWYNWPISQWALRIKYNITPEVYAQVGVYEQNPSNLETGNGF
CCCCHHHHHHHHHCHHHHHHCCCCHHHEEEEEEEECCHHHHHEECEEECCCCCCCCCCCE
KLSGSGTEGMILPVELVWTPSFNSLPGEYRVGYYKSTPNANDVYEDVNGQPQALTGAAFK
EEECCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEHHHHH
SHSSKHGWWVVAQQQLTTHDGDASRGLSIFANATVHDKATNFVDNYQQIGFTYKGPFNSR
CCCCCCCEEEEEECEEECCCCCCCCCEEEEEECEECCHHHHHHHHHHHCCEEECCCCCCC
PKDDIGIGFARIHVNDDVQDRVRLANQISGINDYDNPGFLPVQSTEYNSEIYYGFHVTNW
CCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEE
LTVRPNLQYIKHPGGVDQVDDALVAGIKIQSKF
EEECCCCCEEECCCCCCHHHHHHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]