Click here to switch to the map view.

The map label for this gene is algF [H]

Identifier: 66044306

GI number: 66044306

Start: 1191183

End: 1191851

Strand: Reverse

Name: algF [H]

Synonym: Psyr_1053

Alternate gene names: 66044306

Gene position: 1191851-1191183 (Counterclockwise)

Preceding gene: 66044307

Following gene: 66044305

Centisome position: 19.56

GC content: 60.09

Gene sequence:

>669_bases
ATGACTTTCAACACTACTGCCAACCGTTCGGCCGCAAAACGCCTGTTCAAAACCTGCGCAATGGCCGCAGGTCTGGGCCT
GATGTCCCTGCAGGCTTTCGCCGGCGACTCCGCCCTGTACGGCCCGACCGCACCAAAAGGCTCGACCTTCGTGCGTGTCT
ACAACGCCAGCAACGCCGAAATCAACGCCACCGTTGGCAACACCAACCTCAACGAAGTGGCGCCACTGGGCAGCACTGCG
TTCAGCTTCATGCCGCAGGGCGACTACACCGCCAAGCTGGGCAGCCAGAGCCTGCCGGTGAAACTGGCCGGTGATCACTA
TTACACCATCGTCAACAACGCCAGCGGCAAACCACAGCTGGTCGAAGAGCCACCGTTCAAGAACAAGCAGAAATCCCTGG
TTCGTGTGCAGAACCTGAGCGACAAGTCCCTGACCCTGAAAACCGCTGACGGCAAGACCGATGTGGTCAAGGCTGTAGCG
GCAAAAGGCATCGGCGAGCGTGAAATCAACCCGGTCAAGGTCAGCCTGGCGCTGTACGACGGCGACAAGAAAGTCACCGA
TGTGAAACCTGTGGCACTGGAGCGTGGCGAAGCCGCTGTGCTCTACATCACCGGCAGTGGCAGCAGCCTCTCGCCAGTGT
GGGTCAAGCCACCGGTCGCAACCCGCTAA

Upstream 100 bases:

>100_bases
CGCCGAGCTGAAGAAATCGCGTGACACCCAAGAAAACGTGGCGCTCAACGCCAAACAATCCGAGTCGCCCAACCGGGCGC
AAAACTGAGAGGACTGACTC

Downstream 100 bases:

>100_bases
TACGGATTATGCCGGCCGGTTCAGGGCATCAGCACTGAACCGGCCCGCGCGGAACAAGAACAAGACAGAAACGACAGACA
CCTCGTACAGCCCTAATTGA

Product: alginate biosynthesis protein AlgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTFNTTANRSAAKRLFKTCAMAAGLGLMSLQAFAGDSALYGPTAPKGSTFVRVYNASNAEINATVGNTNLNEVAPLGSTA
FSFMPQGDYTAKLGSQSLPVKLAGDHYYTIVNNASGKPQLVEEPPFKNKQKSLVRVQNLSDKSLTLKTADGKTDVVKAVA
AKGIGEREINPVKVSLALYDGDKKVTDVKPVALERGEAAVLYITGSGSSLSPVWVKPPVATR

Sequences:

>Translated_222_residues
MTFNTTANRSAAKRLFKTCAMAAGLGLMSLQAFAGDSALYGPTAPKGSTFVRVYNASNAEINATVGNTNLNEVAPLGSTA
FSFMPQGDYTAKLGSQSLPVKLAGDHYYTIVNNASGKPQLVEEPPFKNKQKSLVRVQNLSDKSLTLKTADGKTDVVKAVA
AKGIGEREINPVKVSLALYDGDKKVTDVKPVALERGEAAVLYITGSGSSLSPVWVKPPVATR
>Mature_221_residues
TFNTTANRSAAKRLFKTCAMAAGLGLMSLQAFAGDSALYGPTAPKGSTFVRVYNASNAEINATVGNTNLNEVAPLGSTAF
SFMPQGDYTAKLGSQSLPVKLAGDHYYTIVNNASGKPQLVEEPPFKNKQKSLVRVQNLSDKSLTLKTADGKTDVVKAVAA
KGIGEREINPVKVSLALYDGDKKVTDVKPVALERGEAAVLYITGSGSSLSPVWVKPPVATR

Specific function: Together with AlgI and AlgJ, forms an inner membrane complex which probably interacts with the alginate polymerization- transport complex and adds acetyl groups at the O-2 and O-3 positions of polymannuronic acid. Acetylation of alginate is important for

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AlgF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23397; Mature: 23266

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFNTTANRSAAKRLFKTCAMAAGLGLMSLQAFAGDSALYGPTAPKGSTFVRVYNASNAE
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCE
INATVGNTNLNEVAPLGSTAFSFMPQGDYTAKLGSQSLPVKLAGDHYYTIVNNASGKPQL
EEEEECCCCCHHCCCCCCCHHEECCCCCCEEECCCCCCCEEECCCEEEEEEECCCCCCCC
VEEPPFKNKQKSLVRVQNLSDKSLTLKTADGKTDVVKAVAAKGIGEREINPVKVSLALYD
CCCCCCCCCHHHHEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEC
GDKKVTDVKPVALERGEAAVLYITGSGSSLSPVWVKPPVATR
CCCEECCCCCEEECCCCEEEEEEECCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TFNTTANRSAAKRLFKTCAMAAGLGLMSLQAFAGDSALYGPTAPKGSTFVRVYNASNAE
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCE
INATVGNTNLNEVAPLGSTAFSFMPQGDYTAKLGSQSLPVKLAGDHYYTIVNNASGKPQL
EEEEECCCCCHHCCCCCCCHHEECCCCCCEEECCCCCCCEEECCCEEEEEEECCCCCCCC
VEEPPFKNKQKSLVRVQNLSDKSLTLKTADGKTDVVKAVAAKGIGEREINPVKVSLALYD
CCCCCCCCCHHHHEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEC
GDKKVTDVKPVALERGEAAVLYITGSGSSLSPVWVKPPVATR
CCCEECCCCCEEECCCCEEEEEEECCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]