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The map label for this gene is rutC [H]

Identifier: 66044250

GI number: 66044250

Start: 1131257

End: 1131640

Strand: Reverse

Name: rutC [H]

Synonym: Psyr_0997

Alternate gene names: 66044250

Gene position: 1131640-1131257 (Counterclockwise)

Preceding gene: 66044251

Following gene: 66044249

Centisome position: 18.57

GC content: 61.2

Gene sequence:

>384_bases
ATGACCAAGAAAGCGATCATCCCTGCCGGCACCAGCAAACCCATCGCGCCGTTCGTACCGGGCTCCATGGCCGACGGCGT
GCTCTATGTCTCGGGCACGCTGCCGTTCGACAAGGACAACAACGTGGTACACGTCGGCGACGCCACTGCGCAGACCCGTC
ACGTGCTGGAAGCCATCAAAAGCGTGGTCGAGACCGCGGGCGGGACGCTGGACGATGTCACCTTCAACATGATCATGATT
CGTGACTGGGCCGACTATGCCAAGGTCAACGAGGTGTATGCCGAGTATTTCGCCGGCGAGAAGCCAGCCCGTTACTGCAT
CCAGTGCGGCCTGGTCAAACCCGAGGCGCTGATCGAAATCGCCAGCATCGCCCACATCGGCTGA

Upstream 100 bases:

>100_bases
GCGCTGTTCAACATCGAAACCTTCTTTGGCTGGGTTTCCAGCGTCGATGACTTCTGCACCACTTTCAGCCCTGTCGGGCA
ACCTTCGTGAGGACACCAGC

Downstream 100 bases:

>100_bases
ATCGCGACCGTGGGCAGTTGACGCCCACCCGGAGAAAACCCATGTTCCATGAGTTTCATGCCTGCCAGCATGCCGATGCA
CCGACCCTGGTGCTCAGTTC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MTKKAIIPAGTSKPIAPFVPGSMADGVLYVSGTLPFDKDNNVVHVGDATAQTRHVLEAIKSVVETAGGTLDDVTFNMIMI
RDWADYAKVNEVYAEYFAGEKPARYCIQCGLVKPEALIEIASIAHIG

Sequences:

>Translated_127_residues
MTKKAIIPAGTSKPIAPFVPGSMADGVLYVSGTLPFDKDNNVVHVGDATAQTRHVLEAIKSVVETAGGTLDDVTFNMIMI
RDWADYAKVNEVYAEYFAGEKPARYCIQCGLVKPEALIEIASIAHIG
>Mature_126_residues
TKKAIIPAGTSKPIAPFVPGSMADGVLYVSGTLPFDKDNNVVHVGDATAQTRHVLEAIKSVVETAGGTLDDVTFNMIMIR
DWADYAKVNEVYAEYFAGEKPARYCIQCGLVKPEALIEIASIAHIG

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI1787245, Length=127, Percent_Identity=68.503937007874, Blast_Score=194, Evalue=2e-51,
Organism=Escherichia coli, GI87082396, Length=113, Percent_Identity=30.9734513274336, Blast_Score=62, Evalue=9e-12,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=30.0884955752212, Blast_Score=59, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=29.9212598425197, Blast_Score=65, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=29.9212598425197, Blast_Score=65, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=29.9212598425197, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19921376, Length=127, Percent_Identity=37.007874015748, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13627; Mature: 13496

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKAIIPAGTSKPIAPFVPGSMADGVLYVSGTLPFDKDNNVVHVGDATAQTRHVLEAIK
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHH
SVVETAGGTLDDVTFNMIMIRDWADYAKVNEVYAEYFAGEKPARYCIQCGLVKPEALIEI
HHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHH
ASIAHIG
HHHHCCC
>Mature Secondary Structure 
TKKAIIPAGTSKPIAPFVPGSMADGVLYVSGTLPFDKDNNVVHVGDATAQTRHVLEAIK
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHH
SVVETAGGTLDDVTFNMIMIRDWADYAKVNEVYAEYFAGEKPARYCIQCGLVKPEALIEI
HHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHH
ASIAHIG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA