Click here to switch to the map view.

The map label for this gene is nfrA [C]

Identifier: 66044200

GI number: 66044200

Start: 1081673

End: 1083343

Strand: Reverse

Name: nfrA [C]

Synonym: Psyr_0947

Alternate gene names: 66044200

Gene position: 1083343-1081673 (Counterclockwise)

Preceding gene: 66044207

Following gene: 66044199

Centisome position: 17.78

GC content: 60.62

Gene sequence:

>1671_bases
ATGACTCCCGCCTCGTCACAGCCTGTGCCCGCTCAAAAGGACGCCCCGCCCGCGCCTGAAGCCAAGCCGCAGGTCTATGG
CTCGTTCACTCAGGACACCCTGGTCAGCCTGTTGAGTGCGGAGCTGGCTGGCCAGCGCAACCGCTTTGACATCGCCCTGG
ACAACTATGTGACCCAGGCGATCAAGACTCAGGACCCGGGGGTCTCGGAGCGCGCTTATCAGATCGCCGAGTACATGGGT
GCCGATCAATCGGCGCTGGATACCGCACTGATCTGGGCGAGGAACGCGCCGGGAAATCTTGAAGCGCAACGAGCTGCCGC
CATTCAACTGGCGCGCGCCGGGCGTTACGACGATTCCCTTGTGTACATGGAGAGAGTCCTGCAAGGCCAGGGCGACACGC
ACTTCGATTTTCTGGCCCTGTCGGCGGCCGAAACAGATCCGGATACCCGCAATGGTCTGCTCAAGAGCTTTGACCGACTG
CTGGGCAAATACCCGAACAACGGCCAGCTGATTTTCGGCAAGGCGCTGTTGCTGCAGCAGAACGGCGATTCCGAACAATC
GCTGAAACTGCTTGAAGACAACCCGCCGAAAGAAGGTGAAATCGCGCCGATCCTGCTGCACGCCCGCCTGCTGCAAAGCA
TGAATCGAGGCAAGGAAGCGGTGCCCCTGCTGGAAAAAAGCATCAAGAAATACCCCGACGACAAGCGCCTGCGCCTGACC
TATGCGCGCATGCTCGTCGAGCAGAACCGCATGGAAGATGCCAAAGTGCAGTTTTCCGCACTCTTGCAGCAGTATCCGGA
TGACGACGAGCTGCGCTTTTCGCTGGCCCTGGTGTGCCTTGAAGCCAAGGCCTGGGACGAAGCAGCGGGCTATCTGGAAG
AGCTGATCGCCCGTGGCGCGCATGTCGATTCGGCGCATTTGAATCTGGGCCGCATCCACGAAGAGCGCGATGACCCGCAA
AGCGCGCTCAACGAATACGCTCAGGTCGGTCCCGGCCCGGACTTCCTGGCGGCGCAATTGCGCCAGGCCGATATTCTGCT
CAGCAACGGTAACGGTGCCGAAGCCGCCAAACGGCTGTCCGAAGCGCGCGCCGAAGAGCCCGATTATGCAATCCAGCTGT
ACCTGATCGAAGCCGAAACCCTGACCAGCAATGATCAACTGGACCGTGGCTGGCAGGTGCTGAATCAGGCGCTCAAGCAA
TACCCGGACGACGCCAACCTGCTGTACACCCGCGCCATGCTGGCTGAAAAACGCAATGATCTGGCGCAGATGGAAAAAGA
CCTGCGCACCATCATCAAGCGCGAACCGGAAAACGCCATGGCGCTGAATGCACTGGGCTACACCCTTTCCGATCGCACGA
CGCGTTATAGCGAGGCACGCGACCTGATCGAAAAAGCCCACAAGATCAGCCCCGACGATCCGGCAGTGCTCGACAGCCTT
GGCTGGGTGAACTACCGCCTGGGCAATCTGGACGATGCCGAGCGCTACCTGCGTCAGGCACTCGAACGCTTCCCCGACCA
CGAAGTGGCCGCCCACCTGGGCGAAGTACTCTGGGCCAAGGGCGAGCAGCGCGAAGCCAAAAAAGTCTGGGCCAAGGCCC
TTGAACAACAACCCGACAGCACCGTCCTGCGCAGCACATTGCGACGCTTGACCGGATCAGAGACCCTTTGA

Upstream 100 bases:

>100_bases
GTGTCATGATGCTCCCACCGCAGGTAAGCCGCCCTTCTTATATATGAATAGATCCTCCGCGTTGTTCCTTGCTCTCGCCT
TTCTGGGTGGCTGTCAGTCC

Downstream 100 bases:

>100_bases
CGTTATGTTTTTGCGCCACGTAATCGTATTCAGCCTCATCGCCCTGCTCACCGGCTGCGCCGGCCTCACCTCCCGCGAAG
CCGTTCAGGGCAAGGGTGAC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 555

Protein sequence:

>556_residues
MTPASSQPVPAQKDAPPAPEAKPQVYGSFTQDTLVSLLSAELAGQRNRFDIALDNYVTQAIKTQDPGVSERAYQIAEYMG
ADQSALDTALIWARNAPGNLEAQRAAAIQLARAGRYDDSLVYMERVLQGQGDTHFDFLALSAAETDPDTRNGLLKSFDRL
LGKYPNNGQLIFGKALLLQQNGDSEQSLKLLEDNPPKEGEIAPILLHARLLQSMNRGKEAVPLLEKSIKKYPDDKRLRLT
YARMLVEQNRMEDAKVQFSALLQQYPDDDELRFSLALVCLEAKAWDEAAGYLEELIARGAHVDSAHLNLGRIHEERDDPQ
SALNEYAQVGPGPDFLAAQLRQADILLSNGNGAEAAKRLSEARAEEPDYAIQLYLIEAETLTSNDQLDRGWQVLNQALKQ
YPDDANLLYTRAMLAEKRNDLAQMEKDLRTIIKREPENAMALNALGYTLSDRTTRYSEARDLIEKAHKISPDDPAVLDSL
GWVNYRLGNLDDAERYLRQALERFPDHEVAAHLGEVLWAKGEQREAKKVWAKALEQQPDSTVLRSTLRRLTGSETL

Sequences:

>Translated_556_residues
MTPASSQPVPAQKDAPPAPEAKPQVYGSFTQDTLVSLLSAELAGQRNRFDIALDNYVTQAIKTQDPGVSERAYQIAEYMG
ADQSALDTALIWARNAPGNLEAQRAAAIQLARAGRYDDSLVYMERVLQGQGDTHFDFLALSAAETDPDTRNGLLKSFDRL
LGKYPNNGQLIFGKALLLQQNGDSEQSLKLLEDNPPKEGEIAPILLHARLLQSMNRGKEAVPLLEKSIKKYPDDKRLRLT
YARMLVEQNRMEDAKVQFSALLQQYPDDDELRFSLALVCLEAKAWDEAAGYLEELIARGAHVDSAHLNLGRIHEERDDPQ
SALNEYAQVGPGPDFLAAQLRQADILLSNGNGAEAAKRLSEARAEEPDYAIQLYLIEAETLTSNDQLDRGWQVLNQALKQ
YPDDANLLYTRAMLAEKRNDLAQMEKDLRTIIKREPENAMALNALGYTLSDRTTRYSEARDLIEKAHKISPDDPAVLDSL
GWVNYRLGNLDDAERYLRQALERFPDHEVAAHLGEVLWAKGEQREAKKVWAKALEQQPDSTVLRSTLRRLTGSETL
>Mature_555_residues
TPASSQPVPAQKDAPPAPEAKPQVYGSFTQDTLVSLLSAELAGQRNRFDIALDNYVTQAIKTQDPGVSERAYQIAEYMGA
DQSALDTALIWARNAPGNLEAQRAAAIQLARAGRYDDSLVYMERVLQGQGDTHFDFLALSAAETDPDTRNGLLKSFDRLL
GKYPNNGQLIFGKALLLQQNGDSEQSLKLLEDNPPKEGEIAPILLHARLLQSMNRGKEAVPLLEKSIKKYPDDKRLRLTY
ARMLVEQNRMEDAKVQFSALLQQYPDDDELRFSLALVCLEAKAWDEAAGYLEELIARGAHVDSAHLNLGRIHEERDDPQS
ALNEYAQVGPGPDFLAAQLRQADILLSNGNGAEAAKRLSEARAEEPDYAIQLYLIEAETLTSNDQLDRGWQVLNQALKQY
PDDANLLYTRAMLAEKRNDLAQMEKDLRTIIKREPENAMALNALGYTLSDRTTRYSEARDLIEKAHKISPDDPAVLDSLG
WVNYRLGNLDDAERYLRQALERFPDHEVAAHLGEVLWAKGEQREAKKVWAKALEQQPDSTVLRSTLRRLTGSETL

Specific function: Required For Bacteriophage N4 Adsorption. Serves As The Phage Receptor. [C]

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1786780, Length=98, Percent_Identity=34.6938775510204, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011717
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR013105
- InterPro:   IPR019734 [H]

Pfam domain/function: PF07719 TPR_2; PF07721 TPR_4 [H]

EC number: NA

Molecular weight: Translated: 62146; Mature: 62015

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPASSQPVPAQKDAPPAPEAKPQVYGSFTQDTLVSLLSAELAGQRNRFDIALDNYVTQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
IKTQDPGVSERAYQIAEYMGADQSALDTALIWARNAPGNLEAQRAAAIQLARAGRYDDSL
HHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCHHH
VYMERVLQGQGDTHFDFLALSAAETDPDTRNGLLKSFDRLLGKYPNNGQLIFGKALLLQQ
HHHHHHHCCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEC
NGDSEQSLKLLEDNPPKEGEIAPILLHARLLQSMNRGKEAVPLLEKSIKKYPDDKRLRLT
CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHH
YARMLVEQNRMEDAKVQFSALLQQYPDDDELRFSLALVCLEAKAWDEAAGYLEELIARGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HVDSAHLNLGRIHEERDDPQSALNEYAQVGPGPDFLAAQLRQADILLSNGNGAEAAKRLS
CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCHHHHHHHH
EARAEEPDYAIQLYLIEAETLTSNDQLDRGWQVLNQALKQYPDDANLLYTRAMLAEKRND
HHHCCCCCCEEEEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LAQMEKDLRTIIKREPENAMALNALGYTLSDRTTRYSEARDLIEKAHKISPDDPAVLDSL
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHC
GWVNYRLGNLDDAERYLRQALERFPDHEVAAHLGEVLWAKGEQREAKKVWAKALEQQPDS
CCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
TVLRSTLRRLTGSETL
HHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TPASSQPVPAQKDAPPAPEAKPQVYGSFTQDTLVSLLSAELAGQRNRFDIALDNYVTQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
IKTQDPGVSERAYQIAEYMGADQSALDTALIWARNAPGNLEAQRAAAIQLARAGRYDDSL
HHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCHHH
VYMERVLQGQGDTHFDFLALSAAETDPDTRNGLLKSFDRLLGKYPNNGQLIFGKALLLQQ
HHHHHHHCCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEC
NGDSEQSLKLLEDNPPKEGEIAPILLHARLLQSMNRGKEAVPLLEKSIKKYPDDKRLRLT
CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHH
YARMLVEQNRMEDAKVQFSALLQQYPDDDELRFSLALVCLEAKAWDEAAGYLEELIARGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HVDSAHLNLGRIHEERDDPQSALNEYAQVGPGPDFLAAQLRQADILLSNGNGAEAAKRLS
CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCHHHHHHHH
EARAEEPDYAIQLYLIEAETLTSNDQLDRGWQVLNQALKQYPDDANLLYTRAMLAEKRND
HHHCCCCCCEEEEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LAQMEKDLRTIIKREPENAMALNALGYTLSDRTTRYSEARDLIEKAHKISPDDPAVLDSL
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHC
GWVNYRLGNLDDAERYLRQALERFPDHEVAAHLGEVLWAKGEQREAKKVWAKALEQQPDS
CCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
TVLRSTLRRLTGSETL
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7883699; 10984043 [H]