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The map label for this gene is ygiK [H]

Identifier: 66044153

GI number: 66044153

Start: 1017185

End: 1018465

Strand: Reverse

Name: ygiK [H]

Synonym: Psyr_0898

Alternate gene names: 66044153

Gene position: 1018465-1017185 (Counterclockwise)

Preceding gene: 66044154

Following gene: 66044152

Centisome position: 16.71

GC content: 60.97

Gene sequence:

>1281_bases
ATGGACGCTTTTATACTGTTGGGCAGCTTTATCGCGTTGATCCTGATCGGCATGCCGGTGGCCTACGCGCTGGGCCTTTC
AGCCCTGATCGGCGCCTGGTGGATCGACATCCCGGCCGATGCGCTGATGATCCAGATTGCGGGCGGGGTTAACAAATTCT
CGCTGTTGGCGATTCCGTTCTTCGTGCTGGCCGGCGCGATCATGGCCGAAGGCGGCATGTCGCGACGTCTGGTCGCGTTT
GCTGCGGTGCTGGTGGGCTTCGTGCGTGGCGGGCTGTCGCTGGTCAATATCGTGGCTTCGACTTTCTTCGGCGCGATCTC
GGGTTCCTCGGTGGCCGACACGGCCTCGGTAGGCTCGGTGCTGATCCCGGAAATGGAACGCAACGGCTACCCGCGGGACT
TCTCGACGGCAGTGACCGTCAGCGGCTCGGTGCAGGCGCTGCTGACTCCGCCCAGCCACAACTCGGTGCTCTATTCGCTG
GCGGCAGGCGGCACGGTGTCGATCGCGTCGCTGTTCATGGCCGGGATCCTCCCGGGCCTGCTGCTCAGCGCGGTGATGAT
GGGCCTGTGCATGATCTTCGCGCGCAAGCGCAATTACCCCAAGGGTGAAGTGGTGCCGCTGCGTCAGGCGCTGAAAATCG
CCGGTGAAGCGCTCTGGGGGATGATGGCCATGGTCATTATTCTCGGCGGCATTCTGTCGGGGATTTTCACGGCCACCGAG
TCGGCGGCGATTGCCGTGCTCTGGGCGTTCTTTGTCACCATGTTCATCTACCGCGACTACAAATGGCGCGATCTGCCCAA
ACTGATGCACCGGGCGGCACGCACCATTTCCATCGTGATGATTCTGATCGGTTTTGCCGCCAGCTTCGGTTACATCCTGA
CACTGATGGAAATACCGATGAAGATCACCACCGCGTTCCTGACCCTGTCGGACAACCGCTACGTGATCCTGATGTGCATC
AACGTGATGTTGCTGCTGCTCGGTACGGTCATGGACATGGCGCCGCTGATTCTGATCCTGACCCCGATTCTGTTGCCGGT
CATCGTCGGTGTCGGTATCGATCCGGTGCACTTCGGCATGATCATGCTGGTCAATCTGGGGATCGGGCTGATTACCCCGC
CGGTGGGCGCGGTGCTGTTCGTCGGTGCTGCCGTGGGCAAGGTCACCATCGAAGCCACGGTAAAAGCACTGGTGCCGTTC
TATGTCGCGCTGTTCCTGGTGCTGATGCTGGTGACCTACATTCCTGCCATCTCGTTGTGGCTGCCGAGCGTCGTGCTCTG
A

Upstream 100 bases:

>100_bases
GACGCTGGTATTCGTCCTGGAAAGACTGTTTCTGGGTGACCAGAGTCATCGCGCAGTGATGCGCTTCGACGTCATTGAAG
AAAGCGAAGGTGCTGCATAA

Downstream 100 bases:

>100_bases
CGTCTCCAGCTGCAAGGCTGCCGGAGCGCTTGAAAGCGCTCCGGCATGCACCTCTGTTGTCCAGCCAAGGAGGCTGGTTT
GCGTATGTCTGCCCCTGCCC

Product: TRAP dicarboxylate transporter, DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MDAFILLGSFIALILIGMPVAYALGLSALIGAWWIDIPADALMIQIAGGVNKFSLLAIPFFVLAGAIMAEGGMSRRLVAF
AAVLVGFVRGGLSLVNIVASTFFGAISGSSVADTASVGSVLIPEMERNGYPRDFSTAVTVSGSVQALLTPPSHNSVLYSL
AAGGTVSIASLFMAGILPGLLLSAVMMGLCMIFARKRNYPKGEVVPLRQALKIAGEALWGMMAMVIILGGILSGIFTATE
SAAIAVLWAFFVTMFIYRDYKWRDLPKLMHRAARTISIVMILIGFAASFGYILTLMEIPMKITTAFLTLSDNRYVILMCI
NVMLLLLGTVMDMAPLILILTPILLPVIVGVGIDPVHFGMIMLVNLGIGLITPPVGAVLFVGAAVGKVTIEATVKALVPF
YVALFLVLMLVTYIPAISLWLPSVVL

Sequences:

>Translated_426_residues
MDAFILLGSFIALILIGMPVAYALGLSALIGAWWIDIPADALMIQIAGGVNKFSLLAIPFFVLAGAIMAEGGMSRRLVAF
AAVLVGFVRGGLSLVNIVASTFFGAISGSSVADTASVGSVLIPEMERNGYPRDFSTAVTVSGSVQALLTPPSHNSVLYSL
AAGGTVSIASLFMAGILPGLLLSAVMMGLCMIFARKRNYPKGEVVPLRQALKIAGEALWGMMAMVIILGGILSGIFTATE
SAAIAVLWAFFVTMFIYRDYKWRDLPKLMHRAARTISIVMILIGFAASFGYILTLMEIPMKITTAFLTLSDNRYVILMCI
NVMLLLLGTVMDMAPLILILTPILLPVIVGVGIDPVHFGMIMLVNLGIGLITPPVGAVLFVGAAVGKVTIEATVKALVPF
YVALFLVLMLVTYIPAISLWLPSVVL
>Mature_426_residues
MDAFILLGSFIALILIGMPVAYALGLSALIGAWWIDIPADALMIQIAGGVNKFSLLAIPFFVLAGAIMAEGGMSRRLVAF
AAVLVGFVRGGLSLVNIVASTFFGAISGSSVADTASVGSVLIPEMERNGYPRDFSTAVTVSGSVQALLTPPSHNSVLYSL
AAGGTVSIASLFMAGILPGLLLSAVMMGLCMIFARKRNYPKGEVVPLRQALKIAGEALWGMMAMVIILGGILSGIFTATE
SAAIAVLWAFFVTMFIYRDYKWRDLPKLMHRAARTISIVMILIGFAASFGYILTLMEIPMKITTAFLTLSDNRYVILMCI
NVMLLLLGTVMDMAPLILILTPILLPVIVGVGIDPVHFGMIMLVNLGIGLITPPVGAVLFVGAAVGKVTIEATVKALVPF
YVALFLVLMLVTYIPAISLWLPSVVL

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=416, Percent_Identity=37.7403846153846, Blast_Score=241, Evalue=6e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45151; Mature: 45151

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAFILLGSFIALILIGMPVAYALGLSALIGAWWIDIPADALMIQIAGGVNKFSLLAIPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHHHHH
FVLAGAIMAEGGMSRRLVAFAAVLVGFVRGGLSLVNIVASTFFGAISGSSVADTASVGSV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
LIPEMERNGYPRDFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGILPGL
CCCHHHCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
LLSAVMMGLCMIFARKRNYPKGEVVPLRQALKIAGEALWGMMAMVIILGGILSGIFTATE
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAAIAVLWAFFVTMFIYRDYKWRDLPKLMHRAARTISIVMILIGFAASFGYILTLMEIPM
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KITTAFLTLSDNRYVILMCINVMLLLLGTVMDMAPLILILTPILLPVIVGVGIDPVHFGM
HHHHHEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IMLVNLGIGLITPPVGAVLFVGAAVGKVTIEATVKALVPFYVALFLVLMLVTYIPAISLW
HHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPSVVL
HHHHCC
>Mature Secondary Structure
MDAFILLGSFIALILIGMPVAYALGLSALIGAWWIDIPADALMIQIAGGVNKFSLLAIPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHHHHH
FVLAGAIMAEGGMSRRLVAFAAVLVGFVRGGLSLVNIVASTFFGAISGSSVADTASVGSV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
LIPEMERNGYPRDFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGILPGL
CCCHHHCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
LLSAVMMGLCMIFARKRNYPKGEVVPLRQALKIAGEALWGMMAMVIILGGILSGIFTATE
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAAIAVLWAFFVTMFIYRDYKWRDLPKLMHRAARTISIVMILIGFAASFGYILTLMEIPM
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KITTAFLTLSDNRYVILMCINVMLLLLGTVMDMAPLILILTPILLPVIVGVGIDPVHFGM
HHHHHEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IMLVNLGIGLITPPVGAVLFVGAAVGKVTIEATVKALVPFYVALFLVLMLVTYIPAISLW
HHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPSVVL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]