| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yedK [H]
Identifier: 66043995
GI number: 66043995
Start: 839680
End: 840123
Strand: Reverse
Name: yedK [H]
Synonym: Psyr_0734
Alternate gene names: 66043995
Gene position: 840123-839680 (Counterclockwise)
Preceding gene: 66043998
Following gene: 66043994
Centisome position: 13.79
GC content: 54.95
Gene sequence:
>444_bases ATGACGGGAAAATTCTTCAAGGGGCTATGGCCTAACGGACGTGCAGTTGCCCCAGCGAACGGTTGGTTTGAATGGGTGAA GGACCCGGATGACCCCAAGAAAAAGCAGCCCTACTTCATCCGCCTTAAGAGTAAAAAGCCCATGTTCTTCGCGGCGTTGG CCCAGGTGCACAGATGGCTTGAACCGCATGATGGTGACGGGTTCGTCATCATCACGTCGGCAAGCGACTCGGGAATGGTG GATATTCATGATCGCCGCCCGGTGGTACTGACATCAGAAGGTGCGCGGGCATGGCTTGATTCCGAAACAGCACCGCAGAA AGCCGAAGCGTTGGCAAAAGAGCACTGCAGGATTGTTGACGATTTTGAATGGTTCCCGGTTGATCGCGCAGTAGGGAACG TGCGGAATCAAGGACCGGAGCTCATCCAGCCTATCGGGCTTTGA
Upstream 100 bases:
>100_bases CGAGGAGGGCCTGAGTGTGACAAGGTTCGGTGGGGGTGGGAGCCTTTCTGGGCAAAAAGGCAAACGACCAGCACCAATCA ACGCGCGAGTCGAAACCGTG
Downstream 100 bases:
>100_bases CTGCCCCATGCCTTTGACTTCGACTCGACCAGGGGCTGTCCGTCTTCGTCTGCCGCACGTCGTCCGCGCCGAAAGGGGCT AAATGGGCTGAAGCAAATGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MTGKFFKGLWPNGRAVAPANGWFEWVKDPDDPKKKQPYFIRLKSKKPMFFAALAQVHRWLEPHDGDGFVIITSASDSGMV DIHDRRPVVLTSEGARAWLDSETAPQKAEALAKEHCRIVDDFEWFPVDRAVGNVRNQGPELIQPIGL
Sequences:
>Translated_147_residues MTGKFFKGLWPNGRAVAPANGWFEWVKDPDDPKKKQPYFIRLKSKKPMFFAALAQVHRWLEPHDGDGFVIITSASDSGMV DIHDRRPVVLTSEGARAWLDSETAPQKAEALAKEHCRIVDDFEWFPVDRAVGNVRNQGPELIQPIGL >Mature_146_residues TGKFFKGLWPNGRAVAPANGWFEWVKDPDDPKKKQPYFIRLKSKKPMFFAALAQVHRWLEPHDGDGFVIITSASDSGMVD IHDRRPVVLTSEGARAWLDSETAPQKAEALAKEHCRIVDDFEWFPVDRAVGNVRNQGPELIQPIGL
Specific function: Unknown
COG id: COG2135
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To yeast YMR114C [H]
Homologues:
Organism=Escherichia coli, GI48994894, Length=144, Percent_Identity=47.9166666666667, Blast_Score=140, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003738 [H]
Pfam domain/function: PF02586 DUF159 [H]
EC number: NA
Molecular weight: Translated: 16611; Mature: 16480
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGKFFKGLWPNGRAVAPANGWFEWVKDPDDPKKKQPYFIRLKSKKPMFFAALAQVHRWL CCCCCCCCCCCCCCEECCCCCHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC EPHDGDGFVIITSASDSGMVDIHDRRPVVLTSEGARAWLDSETAPQKAEALAKEHCRIVD CCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCCEECCCCCCCHHHHHHHHHHCEEEC DFEWFPVDRAVGNVRNQGPELIQPIGL CCCCCCHHHHHHHHCCCCCHHHCCCCC >Mature Secondary Structure TGKFFKGLWPNGRAVAPANGWFEWVKDPDDPKKKQPYFIRLKSKKPMFFAALAQVHRWL CCCCCCCCCCCCCEECCCCCHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC EPHDGDGFVIITSASDSGMVDIHDRRPVVLTSEGARAWLDSETAPQKAEALAKEHCRIVD CCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCCEECCCCCCCHHHHHHHHHHCEEEC DFEWFPVDRAVGNVRNQGPELIQPIGL CCCCCCHHHHHHHHCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8371104; 9278503 [H]