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The map label for this gene is yqgF [C]

Identifier: 66043751

GI number: 66043751

Start: 522103

End: 522543

Strand: Reverse

Name: yqgF [C]

Synonym: Psyr_0484

Alternate gene names: 66043751

Gene position: 522543-522103 (Counterclockwise)

Preceding gene: 66043752

Following gene: 66043750

Centisome position: 8.58

GC content: 61.45

Gene sequence:

>441_bases
ATGGCCGCCTTACGGCTGCTGCTGGGCATTGATTACGGCACCAAACAGATCGGCGTTGCAGTCGGCCAGGCGATTACCGG
TCAGGCGCGTGAACTCTGTACGCTCAAGGCGCAGAATGGCGTGCCGGACTGGGACAAGGTCCAGGCGCTGATCAACGAGT
GGAAACCTGATGCGATCGTGGTCGGCCTGCCGTTGAACATGGACGGCACGCCCAGCGACATGAGCGCGCGCGCGGAAAAG
TTTTCGCGCAAGCTCAACGGACGCTTTGGTGTAACGGTCTACACCCATGATGAACGCCTGACCACCTTCGAAGCCAAGGG
CGAGCGCATGGCGCGCGGCGGCCAGAAAGGCAGCTATCGCGACAACCCGGTGGATGCCATTGCCGCTGCACTCTTGCTGC
AAGGCTGGCTGGACGAGCACCCCGAACTGTTGAATGTGTGA

Upstream 100 bases:

>100_bases
CCATCCTGTTCGATGTCGACAGCGACCAGCGTCTGGAGGCTGCCGCCAGACGCCTGGGTATCAATCTCAACCTGATCTCG
ACCCAGGCAGGGCACGCTTG

Downstream 100 bases:

>100_bases
CTTTTTCTGCCTTTATCGCTTCGAGATACCCGGATTCCACGTTATCGCTTGAGCATCGCGCCACGGACCGACGCTGCCCG
AGCCTCTAAGGAGCAACCAT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MAALRLLLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMDGTPSDMSARAEK
FSRKLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDAIAAALLLQGWLDEHPELLNV

Sequences:

>Translated_146_residues
MAALRLLLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMDGTPSDMSARAEK
FSRKLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDAIAAALLLQGWLDEHPELLNV
>Mature_145_residues
AALRLLLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMDGTPSDMSARAEKF
SRKLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDAIAAALLLQGWLDEHPELLNV

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=50.3759398496241, Blast_Score=144, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15933; Mature: 15802

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALRLLLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIV
CHHHEEEHHCCCCCHHHHHHHHHHHCCCHHHHHEEECCCCCCCHHHHHHHHHCCCCCEEE
VGLPLNMDGTPSDMSARAEKFSRKLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYR
EEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEHHCCHHHHCCCCCCCCC
DNPVDAIAAALLLQGWLDEHPELLNV
CCHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
AALRLLLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIV
HHHEEEHHCCCCCHHHHHHHHHHHCCCHHHHHEEECCCCCCCHHHHHHHHHCCCCCEEE
VGLPLNMDGTPSDMSARAEKFSRKLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYR
EEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEHHCCHHHHCCCCCCCCC
DNPVDAIAAALLLQGWLDEHPELLNV
CCHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA