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The map label for this gene is rsmE [H]

Identifier: 66043648

GI number: 66043648

Start: 412251

End: 412958

Strand: Reverse

Name: rsmE [H]

Synonym: Psyr_0381

Alternate gene names: 66043648

Gene position: 412958-412251 (Counterclockwise)

Preceding gene: 66043649

Following gene: 66043647

Centisome position: 6.78

GC content: 61.72

Gene sequence:

>708_bases
GTGAACCTGCTGCTGCTTGAGGAAGCCGATTTCATTGCGGCGGACCGGGTGGTCCTGCGTGACCGCCGCCTGAAGCACAT
GCAGGAGGTGCACCGCGCAGAGGTTGGCGACAGTGTGCGTGTGGGCCGCGTCAATGGCCTGCTGGGCAATGCCCAACTGC
TGCGCCTTGAACCGCATGAAGCAGAGCTGCGTGTCGAGCTGCAGAGTGCTCCGCCGGCAAAGCTGCCGCTTACCCTGTTG
CTGGCGTTGCCACGCCCGAAGATGTTACGCCGGGTGTTTCAGACCGTTGCGACCATGGGCGTGCCGAAAGTCATTCTGCT
GAACAGCTACAGGGTGGAAAAAAGCTTCTGGCAGACGCCGTTTCTCGAGCCCGAAGCCATCCGCGAGCAGCTGATTCTGG
GCCTGGAGCAGGCGCGCGATTCGGTGCTGCCTGAAATCGTGATCGAAAAGCGCTTCAAGCCGTTCGTTGAAGATCGCTTG
CCGCAGATCGCGCTCGACACACTGGCCCTGGTCGGCCATCCCGGTGATTTCCCGGCCTGCCCACGTGCGGTCACCCAACC
GGTCACACTGGCCATTGGCCCTGAAGGTGGCTGGATACCGTACGAAATCGATCTGTTGCGCCAGTCAGGTTTGCAGCCCG
TGCAACTGGGCGAACGCATCCTGCGCGTCGAAACCGCTGTAACGGCCCTTCTCGCTCGCTTGTTCTAA

Upstream 100 bases:

>100_bases
TGGGCGTCCTGTGCAGCACGATGATCAAGAAGCGTGGCGAACATCCGGACGATGAGGCCGAGGACGCTGACAAGCAGGAT
CAGCCGCCCGCGACCACTCC

Downstream 100 bases:

>100_bases
GCTGTCAGTGTCGACTAAATCGCTTCAGTTAACCGATAACTGGCCGATGCAGTCGGATACTTAGGACAAAAGATGTCAAG
GAGTGATCATGTCTCGTGGG

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNLLLLEEADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAQLLRLEPHEAELRVELQSAPPAKLPLTLL
LALPRPKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRL
PQIALDTLALVGHPGDFPACPRAVTQPVTLAIGPEGGWIPYEIDLLRQSGLQPVQLGERILRVETAVTALLARLF

Sequences:

>Translated_235_residues
MNLLLLEEADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAQLLRLEPHEAELRVELQSAPPAKLPLTLL
LALPRPKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRL
PQIALDTLALVGHPGDFPACPRAVTQPVTLAIGPEGGWIPYEIDLLRQSGLQPVQLGERILRVETAVTALLARLF
>Mature_235_residues
MNLLLLEEADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAQLLRLEPHEAELRVELQSAPPAKLPLTLL
LALPRPKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRL
PQIALDTLALVGHPGDFPACPRAVTQPVTLAIGPEGGWIPYEIDLLRQSGLQPVQLGERILRVETAVTALLARLF

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 26410; Mature: 26410

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLLEEADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAQLLRLEPHE
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEECCCEEEEECCCC
AELRVELQSAPPAKLPLTLLLALPRPKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTP
CEEEEEECCCCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCC
FLEPEAIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRLPQIALDTLALVGHPGDFPAC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHCCCCCCCCC
PRAVTQPVTLAIGPEGGWIPYEIDLLRQSGLQPVQLGERILRVETAVTALLARLF
CHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNLLLLEEADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAQLLRLEPHE
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEECCCEEEEECCCC
AELRVELQSAPPAKLPLTLLLALPRPKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTP
CEEEEEECCCCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCC
FLEPEAIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRLPQIALDTLALVGHPGDFPAC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHCCCCCCCCC
PRAVTQPVTLAIGPEGGWIPYEIDLLRQSGLQPVQLGERILRVETAVTALLARLF
CHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]