Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 66043492

GI number: 66043492

Start: 236452

End: 237126

Strand: Direct

Name: radC [C]

Synonym: Psyr_0222

Alternate gene names: 66043492

Gene position: 236452-237126 (Clockwise)

Preceding gene: 66043487

Following gene: 66043494

Centisome position: 3.88

GC content: 60.44

Gene sequence:

>675_bases
ATGAGTATTCGCAGTTGGCCCGCGGCTGAACGCCCCCGGGAACGCTTGTTGGAGTTGGGGGCGGCGAGCCTTTCCGACGC
CGAGTTGCTGGCTATCTTTTTACGCACCGGCGTGGCCGGAAAAAGCGCTGTAGACCTTGCGCGTCATCTGCTGAATCAAT
TTGACGGGCTCAGACCGTTACTGGATGCGGATCTGTCGGCATTCACCTCGCAACTGGGGCTCGGGCCTGCCAAGTTCGCT
CAGTTGCAGGCCGTGATGGAAATGGCGCGTCGGCACATGGCCGAGTCCCTGCGCCGTGAATCAGCGCTGGAAAACCCGAC
CCAGGTTCGCAGCTATCTCAAGGCCCTGCTGCGGCATGAGCCGCACGAAGTCTTCGGCTGCCTGTTTCTCGATAACAAGC
ACCGGGTCATGACCTTCGAGATATTGTTTCGCGGGACGATCAACGCGTCTTATGTACACCCGCGCCAGGTGGTGAAACGC
GCGATGGCGCACAACGCTGCCAGCCTGATTCTCTGCCACAACCATCCTTCCGGTATCACCACGCCCAGCCGTTCCGACAT
CGACCTGACCAAGCGCCTCAAGGAAGCACTGCTGCTGGTGGACGTTCATGTGCTTGACCACGTGATCGTGGGGGACGGCG
AGCCACTGTCGATGGTGGAGCGCGGGTTGATGTAG

Upstream 100 bases:

>100_bases
CCATGACGCCTCCCCAGGCCAGATCGTCGTGCAAAAAAGATGGGCTAAGATAGCACAGCGACCGCACCGGAACAGCGGTG
CCCAATCACATGGAGGTGCT

Downstream 100 bases:

>100_bases
CGCCCACGCAGAGCGATAGGGTGGCACTCGGATTATCGTTCTCACGCTCCGCGTCCGGTCTTCAGACGGGGCGTGCCAAT
GCAGCAGGCATTGGCACGCC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSIRSWPAAERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRPLLDADLSAFTSQLGLGPAKFA
QLQAVMEMARRHMAESLRRESALENPTQVRSYLKALLRHEPHEVFGCLFLDNKHRVMTFEILFRGTINASYVHPRQVVKR
AMAHNAASLILCHNHPSGITTPSRSDIDLTKRLKEALLLVDVHVLDHVIVGDGEPLSMVERGLM

Sequences:

>Translated_224_residues
MSIRSWPAAERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRPLLDADLSAFTSQLGLGPAKFA
QLQAVMEMARRHMAESLRRESALENPTQVRSYLKALLRHEPHEVFGCLFLDNKHRVMTFEILFRGTINASYVHPRQVVKR
AMAHNAASLILCHNHPSGITTPSRSDIDLTKRLKEALLLVDVHVLDHVIVGDGEPLSMVERGLM
>Mature_223_residues
SIRSWPAAERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRPLLDADLSAFTSQLGLGPAKFAQ
LQAVMEMARRHMAESLRRESALENPTQVRSYLKALLRHEPHEVFGCLFLDNKHRVMTFEILFRGTINASYVHPRQVVKRA
MAHNAASLILCHNHPSGITTPSRSDIDLTKRLKEALLLVDVHVLDHVIVGDGEPLSMVERGLM

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=44.131455399061, Blast_Score=199, Evalue=9e-53,
Organism=Escherichia coli, GI2367100, Length=116, Percent_Identity=50.8620689655172, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788312, Length=151, Percent_Identity=40.3973509933775, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1788997, Length=134, Percent_Identity=44.0298507462687, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24937; Mature: 24806

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRSWPAAERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRPL
CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
LDADLSAFTSQLGLGPAKFAQLQAVMEMARRHMAESLRRESALENPTQVRSYLKALLRHE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PHEVFGCLFLDNKHRVMTFEILFRGTINASYVHPRQVVKRAMAHNAASLILCHNHPSGIT
CHHHEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC
TPSRSDIDLTKRLKEALLLVDVHVLDHVIVGDGEPLSMVERGLM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
>Mature Secondary Structure 
SIRSWPAAERPRERLLELGAASLSDAELLAIFLRTGVAGKSAVDLARHLLNQFDGLRPL
CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
LDADLSAFTSQLGLGPAKFAQLQAVMEMARRHMAESLRRESALENPTQVRSYLKALLRHE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PHEVFGCLFLDNKHRVMTFEILFRGTINASYVHPRQVVKRAMAHNAASLILCHNHPSGIT
CHHHEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC
TPSRSDIDLTKRLKEALLLVDVHVLDHVIVGDGEPLSMVERGLM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]