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The map label for this gene is xerC [H]

Identifier: 66043455

GI number: 66043455

Start: 197894

End: 198793

Strand: Direct

Name: xerC [H]

Synonym: Psyr_0185

Alternate gene names: 66043455

Gene position: 197894-198793 (Clockwise)

Preceding gene: 66043454

Following gene: 66043456

Centisome position: 3.25

GC content: 62.22

Gene sequence:

>900_bases
ATGGATCAGCATCTGGACGCCTACTGCATGCACCTGCGCAGTGAGCGCCAGGTGTCGCCTCACACGCTGGAAGCCTACCG
ACGCGACCTGGGTAAGGTCCTGGCGTATTGCCAGAAGGCACAGGTGTCGAGCTGGAGTGACCTGGATATCCAGCACCTGC
GCAGCTTCACTGCCCGCCAGCACCAGCAGGGCCAGTCTTCACGCAGCCTGGCGAGGATGCTGTCGGCGGTGCGCGGCTTC
TACAAGTACCTCAATCGCGAAGGCATCTGCCAGCACGACCCGGCAAACGGTCTGTCACCGCCCAAGGGCGAGCGGCGTCT
GCCCAAGACCCTGGACACCGACCGCGCCGCGCAATTGCTGGACGGCGGCGTTGAAGATGATTTCCTGGCGCACCGCGACC
AAGCCATCCTGGAGCTGCTGTACTCGTCAGGGTTGCGCCTCTCCGAACTGACCGGTCTGAATCTGGACCAGCTGGACCTG
CGTGACGGACTGGTGCAGGTGCTGGGTAAGGGCAGCAAGACCCGCGTATTGCCTGTGGGCAGCAAGGCGCGCCAGGCACT
GGAAGTCTGGCTGCCGCTGCGCGCCCTGACCAATCCGCAGGACGACGCGGTATTTGTCAGCCAGCAAGGCAAGCGCCTCG
GCCCGCGCGCCATTCAGGTGCGACTCAAGGCAGCCGGTGAGCGAGAGCTGGGGCAGAATCTGCACCCGCACATGTTGCGG
CACTCCTTCGCCAGTCATCTGCTCGAATCGTCACAGGACCTGCGCGCCGTGCAGGAGCTGCTTGGTCATGCGGATATTAA
GACCACGCAGATATATACACACCTGGACTTCCAGCATTTGGCTACTGTTTATGACAGCGCCCATCCCCGAGCCAAACGTA
AAGGAACTGCAGATGATTAA

Upstream 100 bases:

>100_bases
ACAAAAGCTCGGTCGGCACCCTGTTCCTCAGTTATATCGCCGACGTGCTGAGCCGCCTGCTGCCGCGCTTCGCCCACTCA
TTACGCTCGGTTCGCTAGCC

Downstream 100 bases:

>100_bases
GCTGGTGACGTTTGATCTTGACGACACGCTCTGGGACACCGCCCCGGCCATTGCCGGTGCCGAAGTCACGCTGCGTGACT
GGCTGGGCGAACACGCGCCC

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLSAVRGF
YKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDL
RDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLR
HSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRKGTADD

Sequences:

>Translated_299_residues
MDQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLSAVRGF
YKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDL
RDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLR
HSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRKGTADD
>Mature_299_residues
MDQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLSAVRGF
YKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDL
RDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLR
HSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRKGTADD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=295, Percent_Identity=50.1694915254237, Blast_Score=284, Evalue=6e-78,
Organism=Escherichia coli, GI1789261, Length=297, Percent_Identity=38.7205387205387, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1790768, Length=159, Percent_Identity=35.2201257861635, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790767, Length=167, Percent_Identity=30.5389221556886, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33641; Mature: 33641

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQ
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
HQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLL
HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
DGGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEECC
SKARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLR
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHCCCCCHHHHH
HSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRKGTADD
HHHHHHHHHCHHHHHHHHHHHCCCCCCHHHEEHHCCHHHHHHHHHCCCCHHHCCCCCCC
>Mature Secondary Structure
MDQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQ
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
HQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLL
HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
DGGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEECC
SKARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLR
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHCCCCCHHHHH
HSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRKGTADD
HHHHHHHHHCHHHHHHHHHHHCCCCCCHHHEEHHCCHHHHHHHHHCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA