Click here to switch to the map view.

The map label for this gene is hcp1 [H]

Identifier: 66043372

GI number: 66043372

Start: 112987

End: 113487

Strand: Reverse

Name: hcp1 [H]

Synonym: Psyr_0101

Alternate gene names: 66043372

Gene position: 113487-112987 (Counterclockwise)

Preceding gene: 66043373

Following gene: 66043371

Centisome position: 1.86

GC content: 50.3

Gene sequence:

>501_bases
ATGGCCTTTGATGCGTATTTGAAAATCGACGGAATTCCAGGTGAAGCTCTTGACGCTCAATTTAAGGACTGGATCGAAAT
GGAAAATTTCGACCTAGGAGCAAGCCAGTCCGCCTCGGTCACTGCGACCAGTGCAGGCGGAGCAACGAGTGGTCGTGCTC
GTATGAGTGACCTCTTCTTCCGCAAAACTGTGGACAAAGCCACCCCAAAGCTGCACGAAGCCTGCTGCAGTGGAAAGCAC
TTCAAAGAGGTCACACTCGCGGTCAACCGTGCAGGAACAGACAAGCTCAAATATTTGGAAATAGTACTTGAAGAGGTCAT
TATTTCCTCCGTTTCACTTAACGGTAACGGAGGTGTAGAGGGCGGCTTTCCCACAGAAACGGTACGTCTGAATTATGGCC
GTATCAAAATGACCTATACACAACAAAAACGTGCAGATGGGCAAGGTGGCGGCCAGGTCGTAGGCGGTTGGGATGCCATT
TCCAACAAGGTATACGCCTGA

Upstream 100 bases:

>100_bases
TTTTTCAATCAGCGCCAAGAATTTTTAGAGCAACCCGGTTGACCCCACAAAGTAAGCCACTCAATATGCTGTAAATCAAT
CAGCAGGGATGATTACCGAC

Downstream 100 bases:

>100_bases
TATCACACAAGGAGATGTATGCCCATGGATCCCCAATCAATTGATACCAATAAAGTAGCGCACTGCACTTTTGAATTGAC
AGGCCAGCCCATGAGCCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MAFDAYLKIDGIPGEALDAQFKDWIEMENFDLGASQSASVTATSAGGATSGRARMSDLFFRKTVDKATPKLHEACCSGKH
FKEVTLAVNRAGTDKLKYLEIVLEEVIISSVSLNGNGGVEGGFPTETVRLNYGRIKMTYTQQKRADGQGGGQVVGGWDAI
SNKVYA

Sequences:

>Translated_166_residues
MAFDAYLKIDGIPGEALDAQFKDWIEMENFDLGASQSASVTATSAGGATSGRARMSDLFFRKTVDKATPKLHEACCSGKH
FKEVTLAVNRAGTDKLKYLEIVLEEVIISSVSLNGNGGVEGGFPTETVRLNYGRIKMTYTQQKRADGQGGGQVVGGWDAI
SNKVYA
>Mature_165_residues
AFDAYLKIDGIPGEALDAQFKDWIEMENFDLGASQSASVTATSAGGATSGRARMSDLFFRKTVDKATPKLHEACCSGKHF
KEVTLAVNRAGTDKLKYLEIVLEEVIISSVSLNGNGGVEGGFPTETVRLNYGRIKMTYTQQKRADGQGGGQVVGGWDAIS
NKVYA

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17819; Mature: 17688

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDAYLKIDGIPGEALDAQFKDWIEMENFDLGASQSASVTATSAGGATSGRARMSDLFF
CCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
RKTVDKATPKLHEACCSGKHFKEVTLAVNRAGTDKLKYLEIVLEEVIISSVSLNGNGGVE
HHHHHHCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCCCC
GGFPTETVRLNYGRIKMTYTQQKRADGQGGGQVVGGWDAISNKVYA
CCCCCCEEEEECCEEEEEECHHHHCCCCCCCEEEECHHHHCCCCCC
>Mature Secondary Structure 
AFDAYLKIDGIPGEALDAQFKDWIEMENFDLGASQSASVTATSAGGATSGRARMSDLFF
CEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
RKTVDKATPKLHEACCSGKHFKEVTLAVNRAGTDKLKYLEIVLEEVIISSVSLNGNGGVE
HHHHHHCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCCCC
GGFPTETVRLNYGRIKMTYTQQKRADGQGGGQVVGGWDAISNKVYA
CCCCCCEEEEECCEEEEEECHHHHCCCCCCCEEEECHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]