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The map label for this gene is yciR [C]

Identifier: 66043345

GI number: 66043345

Start: 77633

End: 79297

Strand: Reverse

Name: yciR [C]

Synonym: Psyr_0074

Alternate gene names: 66043345

Gene position: 79297-77633 (Counterclockwise)

Preceding gene: 66043348

Following gene: 66043343

Centisome position: 1.3

GC content: 63.66

Gene sequence:

>1665_bases
TTGCCTACACCTGTCGAACCCTTGCGATTGCTGCTTTTGGCGCACGAGCCCTTCTGGCAGGCGCTGCTTAGCGGCTGCCT
CACTGCGCCGGGAAGCAACGTGATACTTCTGCATGGCGCGAACTGGGACGTTTTCAGCGCCCGCTACGCTAACGAGCGCA
ACACCGTGCTGCTGACCACGCCTGATCTGCAGCCCAGGACCGGGGCCTGTCTGTTGCCTACCGTGGTGCTGCTTGAGGCC
GAACCGCTGGTCGGGCCGACCGGCGTCAGTGACTGGCTGGTGCGCGACGCCTTGACCGGCGACACGCTTCGGCGCTGCCT
GCGCTATGTCCACGAGCGCAGTCGCCTGGAAGACAGCCTGCGACGTCTGGTCGGCCAGGACCCGTTGACCGGCATCGCCA
ACCGCCAGGGGTTTCAGGCGCTGCTCTCGGCTCGCCTGAGCGAAGGCGGCAGCGTGGCGCTGGGGCATCTGGACCTGGAC
AATTTTCGCCGCGCCAACGATTCACTGGGGCATCAGGCCGGTGATCGACTGATCCTGCAAGTGGTGGCGCGCTTGAAAAA
CCAGCTCGATGCCGGTGATCAGATCGCCCGCCTGGGGGGCGACGAATTCGCCTTGTTGATCGACACCCGAACAGCCCCCG
AACGTGCCCTGCAGATGGCCGAACGTATCACCGACGTGCTGGCCGAACCCTATTGGGTCGATGGCGAAAGCCTGTTGCTG
GGTTGCAGCCTGGGCATCGCTCACTCCCAGGCCCAGCCCGAAGCCGACCCGCTGATGTGGCATGCACATATCGCCATGCG
TCAGGCCAAGAGCATGCAGGGCTGCACCTATCACCTGTTCGACGAGCGCATCAACCGCAACGCCCGCAGCCTCGCCGATC
TGGAAGGTGAACTGCGACGCGCCTTGCGCCGCGATGAGCTGGAACTGCATTACCAGCCGCGCCTGTGCCTGGACAGCGGA
CGTATCGTCGGCCTGGAAGCGCTGGTGCGCTGGCGCCATCAGGAACGCGGGCTGCTGCCGCCCAGCAAATTCGTGCCACT
GGCCGAGCAAAGCGGCCTGATCGTGCCGCTCGGCTACTGGGTCATCTTCCGCGCCCTGCGTGACATGCAGGCCCTGCGCG
AACAGGGCTTTGCCCCGCTGCACATGGCGATCAACCTGTCGTTCCGGCAGTTTCAGGACAGCCAGTTGCTGCCGACCTTG
ACTCGCCTGATCGCGGAACACGATGTCGACGCGCGCTGGCTGGAGTTCGAACTGACCGAAACCGCGGTCATGCGGCGCAG
CGATCAGGTCAGGCAGACCATGGACGCATTGCGCCAACTGGGCGTGCGCTTTTCGCTGGACGATTTCGGCACCGGCTATT
CGTCGTTCATGCACCTCAACAGCCTGCCCATCGCGCTGCTCAAGATCGACATGACTTTTGTCGGGCAGATGGAGTTACGC
GAAGAGAACCGCAAGCTGGTCAACGCCATGATCAATCTGGCGCACAACCTGAACCTGGAAGTGGTCGCCGAGGGCGTGGA
AACCGCCGGGCAACTGGAGTTGCTGCGCAGTTACGGCTGCAATCAGGTGCAAGGCTATCTGATCAGCCGGCCGCTGCCGG
TGGAAGAACTGGTGACCTATCTGCGTTCGGAAGTGGCACACGCCGATACCTCCAGATCCGGGTGA

Upstream 100 bases:

>100_bases
TGTTTTTGTTACATTTGCGCCGCGACGCGCGATACGTGTATTTGTCGCGCTCCTGCGAGAGTGCGGCCACCGGTTTTTCC
TTTGCACTTAGGAAGTTAGA

Downstream 100 bases:

>100_bases
CGGTGCACCGGATCAGCCCGGCACCGGCAACCCGGCTGCGTCCTGACGCAACAGCCGCGCCGTCTTCCATTCAAATGCGT
AGGTCAGCGCCACGGCCGAG

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MPTPVEPLRLLLLAHEPFWQALLSGCLTAPGSNVILLHGANWDVFSARYANERNTVLLTTPDLQPRTGACLLPTVVLLEA
EPLVGPTGVSDWLVRDALTGDTLRRCLRYVHERSRLEDSLRRLVGQDPLTGIANRQGFQALLSARLSEGGSVALGHLDLD
NFRRANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERITDVLAEPYWVDGESLLL
GCSLGIAHSQAQPEADPLMWHAHIAMRQAKSMQGCTYHLFDERINRNARSLADLEGELRRALRRDELELHYQPRLCLDSG
RIVGLEALVRWRHQERGLLPPSKFVPLAEQSGLIVPLGYWVIFRALRDMQALREQGFAPLHMAINLSFRQFQDSQLLPTL
TRLIAEHDVDARWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSLPIALLKIDMTFVGQMELR
EENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSYGCNQVQGYLISRPLPVEELVTYLRSEVAHADTSRSG

Sequences:

>Translated_554_residues
MPTPVEPLRLLLLAHEPFWQALLSGCLTAPGSNVILLHGANWDVFSARYANERNTVLLTTPDLQPRTGACLLPTVVLLEA
EPLVGPTGVSDWLVRDALTGDTLRRCLRYVHERSRLEDSLRRLVGQDPLTGIANRQGFQALLSARLSEGGSVALGHLDLD
NFRRANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERITDVLAEPYWVDGESLLL
GCSLGIAHSQAQPEADPLMWHAHIAMRQAKSMQGCTYHLFDERINRNARSLADLEGELRRALRRDELELHYQPRLCLDSG
RIVGLEALVRWRHQERGLLPPSKFVPLAEQSGLIVPLGYWVIFRALRDMQALREQGFAPLHMAINLSFRQFQDSQLLPTL
TRLIAEHDVDARWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSLPIALLKIDMTFVGQMELR
EENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSYGCNQVQGYLISRPLPVEELVTYLRSEVAHADTSRSG
>Mature_553_residues
PTPVEPLRLLLLAHEPFWQALLSGCLTAPGSNVILLHGANWDVFSARYANERNTVLLTTPDLQPRTGACLLPTVVLLEAE
PLVGPTGVSDWLVRDALTGDTLRRCLRYVHERSRLEDSLRRLVGQDPLTGIANRQGFQALLSARLSEGGSVALGHLDLDN
FRRANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERITDVLAEPYWVDGESLLLG
CSLGIAHSQAQPEADPLMWHAHIAMRQAKSMQGCTYHLFDERINRNARSLADLEGELRRALRRDELELHYQPRLCLDSGR
IVGLEALVRWRHQERGLLPPSKFVPLAEQSGLIVPLGYWVIFRALRDMQALREQGFAPLHMAINLSFRQFQDSQLLPTLT
RLIAEHDVDARWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSLPIALLKIDMTFVGQMELRE
ENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSYGCNQVQGYLISRPLPVEELVTYLRSEVAHADTSRSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=36.0655737704918, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=32.1759259259259, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=28.5024154589372, Blast_Score=162, Evalue=7e-41,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=33.8709677419355, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=33.8912133891213, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=35.3909465020576, Blast_Score=141, Evalue=9e-35,
Organism=Escherichia coli, GI87081845, Length=266, Percent_Identity=32.3308270676692, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788502, Length=286, Percent_Identity=30.4195804195804, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1787055, Length=264, Percent_Identity=32.5757575757576, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=32.9268292682927, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1788849, Length=431, Percent_Identity=25.754060324826, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082096, Length=420, Percent_Identity=24.5238095238095, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=31.6129032258064, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1789650, Length=467, Percent_Identity=22.2698072805139, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=30.5555555555556, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787056, Length=146, Percent_Identity=32.8767123287671, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=28.0487804878049, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081977, Length=158, Percent_Identity=34.1772151898734, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787262, Length=105, Percent_Identity=35.2380952380952, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081974, Length=188, Percent_Identity=30.8510638297872, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787802, Length=130, Percent_Identity=34.6153846153846, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 62146; Mature: 62015

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPVEPLRLLLLAHEPFWQALLSGCLTAPGSNVILLHGANWDVFSARYANERNTVLLTT
CCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEHEECCCCCEEEEEC
PDLQPRTGACLLPTVVLLEAEPLVGPTGVSDWLVRDALTGDTLRRCLRYVHERSRLEDSL
CCCCCCCCCHHHHHHHEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RRLVGQDPLTGIANRQGFQALLSARLSEGGSVALGHLDLDNFRRANDSLGHQAGDRLILQ
HHHHCCCCCCHHCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCHHHCHHHHHHHHHH
VVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERITDVLAEPYWVDGESLLL
HHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCEEE
GCSLGIAHSQAQPEADPLMWHAHIAMRQAKSMQGCTYHLFDERINRNARSLADLEGELRR
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
ALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQERGLLPPSKFVPLAEQSGLIVPLGYW
HHHCCCCEEEECCCEEECCCCEEHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCEEEHHHH
VIFRALRDMQALREQGFAPLHMAINLSFRQFQDSQLLPTLTRLIAEHDVDARWLEFELTE
HHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEHHH
TAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSLPIALLKIDMTFVGQMELR
HHHHHHHHHHHHHHHHHHHCCCEECCHHCCCCHHHHHHHCCCCEEEEEECHHHHCHHHHH
EENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSYGCNQVQGYLISRPLPVEELVTY
HHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHCCCCHHCCEEECCCCCHHHHHHH
LRSEVAHADTSRSG
HHHHHHHCCCCCCC
>Mature Secondary Structure 
PTPVEPLRLLLLAHEPFWQALLSGCLTAPGSNVILLHGANWDVFSARYANERNTVLLTT
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEHEECCCCCEEEEEC
PDLQPRTGACLLPTVVLLEAEPLVGPTGVSDWLVRDALTGDTLRRCLRYVHERSRLEDSL
CCCCCCCCCHHHHHHHEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RRLVGQDPLTGIANRQGFQALLSARLSEGGSVALGHLDLDNFRRANDSLGHQAGDRLILQ
HHHHCCCCCCHHCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCHHHCHHHHHHHHHH
VVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERITDVLAEPYWVDGESLLL
HHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCEEE
GCSLGIAHSQAQPEADPLMWHAHIAMRQAKSMQGCTYHLFDERINRNARSLADLEGELRR
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
ALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQERGLLPPSKFVPLAEQSGLIVPLGYW
HHHCCCCEEEECCCEEECCCCEEHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCEEEHHHH
VIFRALRDMQALREQGFAPLHMAINLSFRQFQDSQLLPTLTRLIAEHDVDARWLEFELTE
HHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEHHH
TAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSLPIALLKIDMTFVGQMELR
HHHHHHHHHHHHHHHHHHHCCCEECCHHCCCCHHHHHHHCCCCEEEEEECHHHHCHHHHH
EENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSYGCNQVQGYLISRPLPVEELVTY
HHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHCCCCHHCCEEECCCCCHHHHHHH
LRSEVAHADTSRSG
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]