| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ywbL [H]
Identifier: 66043320
GI number: 66043320
Start: 49110
End: 51008
Strand: Reverse
Name: ywbL [H]
Synonym: Psyr_0049
Alternate gene names: 66043320
Gene position: 51008-49110 (Counterclockwise)
Preceding gene: 66043321
Following gene: 66043319
Centisome position: 0.84
GC content: 65.4
Gene sequence:
>1899_bases ATGCCCGTCCATTCTCGTTTTCTTGCCTGGTTACTGTTGCCGCTCCTGGCGCTGGGCAGCTGCGTTGCGCTGGCCGACCC GGTCGAGGGTGCAGCCCAGGCGCTGCATCTGCTGGATTACCTGGGGGCCGATTACCCGGCGACCGTGGCAGACGGCAAGG TCGTGGACACCGTCAAGTACCAGCAACAGGTCGATAACCTGGCTGCGTTGCAGGGCCTGGTCGTTGCCTTGCCGCAGCGC GCCGGGCGGGATGCTCTGGAGCAGGCGGTCACCCAGCTGAAAAGCGCTGTGGCGGGTCGACAGGACGCTGCGCAGGTCAC GCGTCAGGCGCGGCAGTTGAGTGCCAGGCTCGCGCTTGCCTACGAGGTCAGTCAGGCCCCGGCCATTACGCCGGACCCCG CCCGTGGCGCGCCTTTGTACGCCCAGCATTGCTCGGTGTGCCATGGCGACAGCGGTGCAGGGGATGGACCGGCAGGTATC GGCCTGGAACCGCCGCCCTCGAACCTGCGGGATACCGCGCGGCTGGATCGCCTGAGTCTCTACGATCTCTACAACGCGAC CGGGCTGGGTATTGCCGGCACCGATATGCCCGCGTTCGCCGACCAGCTGGATGATCGCCAGCGCTGGGATGTAGCGACCT ATATCGCCAGCTTCAGCGCGCAACCTGTCGCCCAGCCTGCCAAGACCTTCAACCTTGCCGACCTGGCTCGCCAGACACCG GCCGAAATCCAGGCAGCCGAAGGTCCGGACGCTACCGCCACCTTCCGGGCCCAGCGCGCGCAGCCACCACAAGTACAGCG CGGCCCGGCGCAACTGCTGGATTACACCAGTGTAACGCTGGACAAGAGCCTGGCGGCCTACAAGGCCGGTGATCGCGAGC AGGCCTATGATTTGTCCGTGGCAGCGTATCTGGAGGGTTTCGAGCTGGTCGAAAGCTCGCTGGATAACGTCGACGCCAAT GTGCGCAAGGACACTGAAAAGAGCCTGATGGCTTACCGGCAGTCCTTGCAGGACAGCATGCCGCTACCTCAGGTTGCGCA GAAGCTGGAAGCGGCCAAAGGCAAGCTCAAGGAGTCGGCGGACCTGTTGGGCAGCGACGGCCTGAGCCTGTCACTGAGCT ACATCTCGGGCCTGTTGATCCTGCTGCGTGAAGGGCTGGAAGCGATTCTGGTACTGGCGGCGATTCTGGCGTTTCTGCGC AACACCGGCCAGCAGTCTGCCGTACGCAGCGTCAACATCGGCTGGGGTCTGGCGCTGCTGGCCGGGCTGGCCACCTGGGC GCTCGCGGCGTATGTCATCGACGTCAGCGGCGCACAACGGGAATTGCTGGAAGGCGCCACCGCGTTGTTCGCCAGTGTGA TGGTGCTCTGGCTCGGGGTGTGGATGCATGACCGTCGCCACGCCGCTGCGTGGCAGGACTACGTCAAAAGCAGTCTGGTC GGCGGCGGCGGTCGTTTCGGCTTCGCGGTGCTGGCGTTCTTCTCGGTCTACCGCGAGCTGTTCGAAGTCATCCTGTTCTA CGAAACCCTGTGGCTGCAGGCAGGACCGGCCGGACACGATGCCGTGCTGGCGGGCGGTGCCACGGCGCTGGTGCTGCTCG TGGGCCTGGCGTGGATCATCCTGCGCGGCTCGGCGAAGCTGCCGCTGTCGCTGTTCTTCGGCATCAACGCTGCGCTGCTC TGCGCACTGTCGGTGGTGTTTGCCGGTCACGGCGTCAAGGCGCTGCAAGAGGCGGGCATATTCGGCACAAGGCCGGTGCC GTTCTTCGAGTTCGACTGGCTGGGCATTCACGCCGACCTGTACTCGCTCGGCGCGCAGGCCATCGCCCTGATCGCCATTG CCGTGCTGTACGGCAGAAGTCGTCTGGCCGAGAAGCGCAGGCTGCAGACGGCAGACTGA
Upstream 100 bases:
>100_bases CTGAACGTAAGATTCTGTAACAAAAATAGACCTCGACTATTGAGTAGTGCCGTTGCGGCGTTAACAATGCAACGCTTCGC ATTCCCGTCGAGATTCTGTA
Downstream 100 bases:
>100_bases AACTTCACGCGTGCTCAAGGACAAGCGGCGCCCGCCGCTTGTCCTGACTGTATGTTTAAGTGCTATTAAAGCCCTCCTTT AGATAGTTCCCGCCCTGTAT
Product: cytochrome c, class I:Iron permease FTR1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 632; Mature: 631
Protein sequence:
>632_residues MPVHSRFLAWLLLPLLALGSCVALADPVEGAAQALHLLDYLGADYPATVADGKVVDTVKYQQQVDNLAALQGLVVALPQR AGRDALEQAVTQLKSAVAGRQDAAQVTRQARQLSARLALAYEVSQAPAITPDPARGAPLYAQHCSVCHGDSGAGDGPAGI GLEPPPSNLRDTARLDRLSLYDLYNATGLGIAGTDMPAFADQLDDRQRWDVATYIASFSAQPVAQPAKTFNLADLARQTP AEIQAAEGPDATATFRAQRAQPPQVQRGPAQLLDYTSVTLDKSLAAYKAGDREQAYDLSVAAYLEGFELVESSLDNVDAN VRKDTEKSLMAYRQSLQDSMPLPQVAQKLEAAKGKLKESADLLGSDGLSLSLSYISGLLILLREGLEAILVLAAILAFLR NTGQQSAVRSVNIGWGLALLAGLATWALAAYVIDVSGAQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYVKSSLV GGGGRFGFAVLAFFSVYRELFEVILFYETLWLQAGPAGHDAVLAGGATALVLLVGLAWIILRGSAKLPLSLFFGINAALL CALSVVFAGHGVKALQEAGIFGTRPVPFFEFDWLGIHADLYSLGAQAIALIAIAVLYGRSRLAEKRRLQTAD
Sequences:
>Translated_632_residues MPVHSRFLAWLLLPLLALGSCVALADPVEGAAQALHLLDYLGADYPATVADGKVVDTVKYQQQVDNLAALQGLVVALPQR AGRDALEQAVTQLKSAVAGRQDAAQVTRQARQLSARLALAYEVSQAPAITPDPARGAPLYAQHCSVCHGDSGAGDGPAGI GLEPPPSNLRDTARLDRLSLYDLYNATGLGIAGTDMPAFADQLDDRQRWDVATYIASFSAQPVAQPAKTFNLADLARQTP AEIQAAEGPDATATFRAQRAQPPQVQRGPAQLLDYTSVTLDKSLAAYKAGDREQAYDLSVAAYLEGFELVESSLDNVDAN VRKDTEKSLMAYRQSLQDSMPLPQVAQKLEAAKGKLKESADLLGSDGLSLSLSYISGLLILLREGLEAILVLAAILAFLR NTGQQSAVRSVNIGWGLALLAGLATWALAAYVIDVSGAQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYVKSSLV GGGGRFGFAVLAFFSVYRELFEVILFYETLWLQAGPAGHDAVLAGGATALVLLVGLAWIILRGSAKLPLSLFFGINAALL CALSVVFAGHGVKALQEAGIFGTRPVPFFEFDWLGIHADLYSLGAQAIALIAIAVLYGRSRLAEKRRLQTAD >Mature_631_residues PVHSRFLAWLLLPLLALGSCVALADPVEGAAQALHLLDYLGADYPATVADGKVVDTVKYQQQVDNLAALQGLVVALPQRA GRDALEQAVTQLKSAVAGRQDAAQVTRQARQLSARLALAYEVSQAPAITPDPARGAPLYAQHCSVCHGDSGAGDGPAGIG LEPPPSNLRDTARLDRLSLYDLYNATGLGIAGTDMPAFADQLDDRQRWDVATYIASFSAQPVAQPAKTFNLADLARQTPA EIQAAEGPDATATFRAQRAQPPQVQRGPAQLLDYTSVTLDKSLAAYKAGDREQAYDLSVAAYLEGFELVESSLDNVDANV RKDTEKSLMAYRQSLQDSMPLPQVAQKLEAAKGKLKESADLLGSDGLSLSLSYISGLLILLREGLEAILVLAAILAFLRN TGQQSAVRSVNIGWGLALLAGLATWALAAYVIDVSGAQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYVKSSLVG GGGRFGFAVLAFFSVYRELFEVILFYETLWLQAGPAGHDAVLAGGATALVLLVGLAWIILRGSAKLPLSLFFGINAALLC ALSVVFAGHGVKALQEAGIFGTRPVPFFEFDWLGIHADLYSLGAQAIALIAIAVLYGRSRLAEKRRLQTAD
Specific function: Unknown
COG id: COG0672
COG function: function code P; High-affinity Fe2+/Pb2+ permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005217 - InterPro: IPR004923 [H]
Pfam domain/function: PF03239 FTR1 [H]
EC number: NA
Molecular weight: Translated: 67343; Mature: 67212
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVHSRFLAWLLLPLLALGSCVALADPVEGAAQALHLLDYLGADYPATVADGKVVDTVKY CCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH QQQVDNLAALQGLVVALPQRAGRDALEQAVTQLKSAVAGRQDAAQVTRQARQLSARLALA HHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH YEVSQAPAITPDPARGAPLYAQHCSVCHGDSGAGDGPAGIGLEPPPSNLRDTARLDRLSL EECCCCCCCCCCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH YDLYNATGLGIAGTDMPAFADQLDDRQRWDVATYIASFSAQPVAQPAKTFNLADLARQTP HHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHCCC AEIQAAEGPDATATFRAQRAQPPQVQRGPAQLLDYTSVTLDKSLAAYKAGDREQAYDLSV CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AAYLEGFELVESSLDNVDANVRKDTEKSLMAYRQSLQDSMPLPQVAQKLEAAKGKLKESA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH DLLGSDGLSLSLSYISGLLILLREGLEAILVLAAILAFLRNTGQQSAVRSVNIGWGLALL HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHH AGLATWALAAYVIDVSGAQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYVKSSLV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC GGGGRFGFAVLAFFSVYRELFEVILFYETLWLQAGPAGHDAVLAGGATALVLLVGLAWII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHH LRGSAKLPLSLFFGINAALLCALSVVFAGHGVKALQEAGIFGTRPVPFFEFDWLGIHADL HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEECCEEHHHHH YSLGAQAIALIAIAVLYGRSRLAEKRRLQTAD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PVHSRFLAWLLLPLLALGSCVALADPVEGAAQALHLLDYLGADYPATVADGKVVDTVKY CCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH QQQVDNLAALQGLVVALPQRAGRDALEQAVTQLKSAVAGRQDAAQVTRQARQLSARLALA HHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH YEVSQAPAITPDPARGAPLYAQHCSVCHGDSGAGDGPAGIGLEPPPSNLRDTARLDRLSL EECCCCCCCCCCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH YDLYNATGLGIAGTDMPAFADQLDDRQRWDVATYIASFSAQPVAQPAKTFNLADLARQTP HHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHCCC AEIQAAEGPDATATFRAQRAQPPQVQRGPAQLLDYTSVTLDKSLAAYKAGDREQAYDLSV CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AAYLEGFELVESSLDNVDANVRKDTEKSLMAYRQSLQDSMPLPQVAQKLEAAKGKLKESA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH DLLGSDGLSLSLSYISGLLILLREGLEAILVLAAILAFLRNTGQQSAVRSVNIGWGLALL HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHH AGLATWALAAYVIDVSGAQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYVKSSLV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC GGGGRFGFAVLAFFSVYRELFEVILFYETLWLQAGPAGHDAVLAGGATALVLLVGLAWII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHH LRGSAKLPLSLFFGINAALLCALSVVFAGHGVKALQEAGIFGTRPVPFFEFDWLGIHADL HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEECCEEHHHHH YSLGAQAIALIAIAVLYGRSRLAEKRRLQTAD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]