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The map label for this gene is yybE [H]

Identifier: 62391766

GI number: 62391766

Start: 3100798

End: 3101724

Strand: Reverse

Name: yybE [H]

Synonym: cg3239

Alternate gene names: 62391766

Gene position: 3101724-3100798 (Counterclockwise)

Preceding gene: 62391769

Following gene: 62391765

Centisome position: 94.49

GC content: 56.74

Gene sequence:

>927_bases
ATGGGCAACGACGGCGGAGACCTGCGAATCGACGACCTACGCAGCTTCATTTCAGTCGCTCAATCAGGCCACCTCACCGA
AACTGCCGAAAGATTAGGCATCCCGCAGCCCACACTTTCCAGACGAATCAGCCGAGTGGAAAAACACGCAGGCACCCCAC
TTTTCGACCGCGCCGGCCGCAAACTCGTCCTCAACCAACGAGGCCACGCCTTCCTCAACCACGCCAGCGCCATCGTCGCA
GAATTCAACTCCGCCGCAACTGAAATCAAACGCCTCATGGACCCAGAAAAAGGCACAATCCGACTGGACTTCATGCATTC
CTTGGGCACTTGGATGGTCCCCGAACTTATCCGAACATTCCGCGCCGAACACCCCAACGTAGAATTCCAACTCCACCAAG
CGGCAGCAATGCTCCTGGTAGATCGTGTTTTGGCTGATGAAACTGACCTCGCATTAGTTGGCCCCAAACCTGCCGAGGTT
GGTACCTCTTTAGGGTGGGCGCCACTGCTTCGTCAACGACTTGCCCTAGCTGTTCCCGCAGATCACCGGCTTGCCTCCTT
TTCTGGCCAAGGAGAATTGCCGTTGATTACTGCGGCGGAAGAACCTTTCGTGGCGATGCGAGCAGGTTTCGGCACCCGAC
TCCTCATGGATGCATTAGCCGAAGAAGCCGGTTTTGTTCCCAATGTGGTTTTCGAATCCATGGAACTCACCACCGTCGCA
GGGCTTGTCAGCGCAGGTCTCGGCGTTGGTGTGGTTCCGATGGATGATCCGTACCTTCCCACAGTGGGAATCGTGCAACG
CCCACTTAGTCCACCCGCTTATAGGGAACTAGGTTTGGTGTGGCGACTCAACGCGGGGCCGGCACCTGCGGTGGATAACT
TCCGGAAGTTCGTGGCGGGATCGAGGTATGCATTAGAAGAGGGCTGA

Upstream 100 bases:

>100_bases
ATTGCTTGGCTCATGGAGTTCATCATGCGCCAACAGCAAATATTAGTAAAATGTTAGAAATAGCTGTTTTTGATTCACTT
TGTGCATGTAGGCTGTGACC

Downstream 100 bases:

>100_bases
GCTGTAAGTGTCGTGGGTGCCGTTTTAAGGGGTTGAGTTTTCCCGATGACTAGGAGTTGGTCCAGATTGTGCGTTAGGGG
CCCCTAGGGGCGATTCTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MGNDGGDLRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGRKLVLNQRGHAFLNHASAIVA
EFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTFRAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEV
GTSLGWAPLLRQRLALAVPADHRLASFSGQGELPLITAAEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAGSRYALEEG

Sequences:

>Translated_308_residues
MGNDGGDLRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGRKLVLNQRGHAFLNHASAIVA
EFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTFRAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEV
GTSLGWAPLLRQRLALAVPADHRLASFSGQGELPLITAAEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAGSRYALEEG
>Mature_307_residues
GNDGGDLRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGRKLVLNQRGHAFLNHASAIVAE
FNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTFRAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEVG
TSLGWAPLLRQRLALAVPADHRLASFSGQGELPLITAAEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVAG
LVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAGSRYALEEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=26.1324041811847, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=29.6928327645051, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI157672245, Length=229, Percent_Identity=31.4410480349345, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI2367136, Length=278, Percent_Identity=28.4172661870504, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=25, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=24.4224422442244, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1790399, Length=281, Percent_Identity=25.2669039145907, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788887, Length=268, Percent_Identity=26.1194029850746, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788296, Length=237, Percent_Identity=27.4261603375527, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=228, Percent_Identity=25.4385964912281, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786713, Length=292, Percent_Identity=26.3698630136986, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788481, Length=300, Percent_Identity=25.6666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=23.2954545454545, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=308, Percent_Identity=25.3246753246753, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787806, Length=250, Percent_Identity=23.6, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082132, Length=254, Percent_Identity=23.6220472440945, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=133, Percent_Identity=27.8195488721804, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787589, Length=123, Percent_Identity=31.7073170731707, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=22.3577235772358, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33354; Mature: 33223

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNDGGDLRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGR
CCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCC
KLVLNQRGHAFLNHASAIVAEFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTF
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHH
RAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEVGTSLGWAPLLRQRLALAVPA
HCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHCCCC
DHRLASFSGQGELPLITAAEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
CCCHHCCCCCCCCCEEEECCCCCEEHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAG
HHHHHCCCCCEEECCCCCCCCHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHCC
SRYALEEG
CCCCCCCC
>Mature Secondary Structure 
GNDGGDLRIDDLRSFISVAQSGHLTETAERLGIPQPTLSRRISRVEKHAGTPLFDRAGR
CCCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHCCC
KLVLNQRGHAFLNHASAIVAEFNSAATEIKRLMDPEKGTIRLDFMHSLGTWMVPELIRTF
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHH
RAEHPNVEFQLHQAAAMLLVDRVLADETDLALVGPKPAEVGTSLGWAPLLRQRLALAVPA
HCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHCCCC
DHRLASFSGQGELPLITAAEEPFVAMRAGFGTRLLMDALAEEAGFVPNVVFESMELTTVA
CCCHHCCCCCCCCCEEEECCCCCEEHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GLVSAGLGVGVVPMDDPYLPTVGIVQRPLSPPAYRELGLVWRLNAGPAPAVDNFRKFVAG
HHHHHCCCCCEEECCCCCCCCHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHCC
SRYALEEG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]