Click here to switch to the map view.

The map label for this gene is dgoR [H]

Identifier: 62391489

GI number: 62391489

Start: 2792863

End: 2793585

Strand: Reverse

Name: dgoR [H]

Synonym: cg2936

Alternate gene names: 62391489

Gene position: 2793585-2792863 (Counterclockwise)

Preceding gene: 62391494

Following gene: 62391488

Centisome position: 85.1

GC content: 55.05

Gene sequence:

>723_bases
ATGGAAAGCTCCAAAAAGACTTCGCGATCAAGGTCCACTACTCAAGAAGCAGTGCGCGACATTAAAAAATACATTCGGGA
CAACCGGCTGCGTACGGGAGACCTTCTTCCTTCCGAAGCGTTCTTATGTGAGGAATTGGGTTGTTCCCGTTCTGCGATCA
GGGAGGCGATCCGCGCGCTCGTGACCTTGGACATCGTCGAGGTTCGCCACGGCTACGGCACTTTCGTGTCCAGGATGTCC
CTCGAGCCCCTGATCAACGGGATGGTGTTCCGCACGGTGTTGGACAATGACACCTCGGTGGAAAACCTTTTCTACGTGGT
GGATACCCGCGAAATCCTTGACCTTTCACTTGGCGAAGAGCTGATCGAGGTGTTCACCGACGATGACCGCGAGCTACTCC
TTGATCTGGTGGACAAGATGCGCGAGCACAACGATCAGGGCGAATCCTTTGTGGTGGAGGATCAAAAATTCCACCGAGCA
CTCCTAGCGCGAACGAAAAACCCGCTGATTAGAGAGCTCAACGATGCGTTTTGGCAGATCCAAACCGAGGCGCAGCCCAT
GCTCAATCTGGCTATGCCCGCAGACATCGACGAAACCATCAAAGCTCACAGCGACATCGTCGAAGCGCTCTCCAGCGGCA
ACATCGACGATTATCGCAGCGCCGTGCTCGCTCACTACGCGCCGTTTCGCCGCATGATTTCCAACATGCTCGATGCGCAC
TAG

Upstream 100 bases:

>100_bases
AGGTAGAACATCTGAAAGCACTTCAGATAAGACGGATGGGGTCTGATGGAAACGACAGTCGATATGATCAGAACCATCTC
CAGATTAGGAAGTGAACACA

Downstream 100 bases:

>100_bases
CCTCATTGCGCGCGGGTTGTACCGCATTCCCGCGCTGGTCTGGGATCAGGGTCTTTTAACGCTTTTCGACGCCCGCCTCA
GTGTTGACGACCTCCCCGCA

Product: GntR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MESSKKTSRSRSTTQEAVRDIKKYIRDNRLRTGDLLPSEAFLCEELGCSRSAIREAIRALVTLDIVEVRHGYGTFVSRMS
LEPLINGMVFRTVLDNDTSVENLFYVVDTREILDLSLGEELIEVFTDDDRELLLDLVDKMREHNDQGESFVVEDQKFHRA
LLARTKNPLIRELNDAFWQIQTEAQPMLNLAMPADIDETIKAHSDIVEALSSGNIDDYRSAVLAHYAPFRRMISNMLDAH

Sequences:

>Translated_240_residues
MESSKKTSRSRSTTQEAVRDIKKYIRDNRLRTGDLLPSEAFLCEELGCSRSAIREAIRALVTLDIVEVRHGYGTFVSRMS
LEPLINGMVFRTVLDNDTSVENLFYVVDTREILDLSLGEELIEVFTDDDRELLLDLVDKMREHNDQGESFVVEDQKFHRA
LLARTKNPLIRELNDAFWQIQTEAQPMLNLAMPADIDETIKAHSDIVEALSSGNIDDYRSAVLAHYAPFRRMISNMLDAH
>Mature_240_residues
MESSKKTSRSRSTTQEAVRDIKKYIRDNRLRTGDLLPSEAFLCEELGCSRSAIREAIRALVTLDIVEVRHGYGTFVSRMS
LEPLINGMVFRTVLDNDTSVENLFYVVDTREILDLSLGEELIEVFTDDDRELLLDLVDKMREHNDQGESFVVEDQKFHRA
LLARTKNPLIRELNDAFWQIQTEAQPMLNLAMPADIDETIKAHSDIVEALSSGNIDDYRSAVLAHYAPFRRMISNMLDAH

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=211, Percent_Identity=25.1184834123223, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27463; Mature: 27463

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESSKKTSRSRSTTQEAVRDIKKYIRDNRLRTGDLLPSEAFLCEELGCSRSAIREAIRAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
VTLDIVEVRHGYGTFVSRMSLEPLINGMVFRTVLDNDTSVENLFYVVDTREILDLSLGEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECHHHHHHHHHHHH
LIEVFTDDDRELLLDLVDKMREHNDQGESFVVEDQKFHRALLARTKNPLIRELNDAFWQI
HHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHH
QTEAQPMLNLAMPADIDETIKAHSDIVEALSSGNIDDYRSAVLAHYAPFRRMISNMLDAH
HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MESSKKTSRSRSTTQEAVRDIKKYIRDNRLRTGDLLPSEAFLCEELGCSRSAIREAIRAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
VTLDIVEVRHGYGTFVSRMSLEPLINGMVFRTVLDNDTSVENLFYVVDTREILDLSLGEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECHHHHHHHHHHHH
LIEVFTDDDRELLLDLVDKMREHNDQGESFVVEDQKFHRALLARTKNPLIRELNDAFWQI
HHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHH
QTEAQPMLNLAMPADIDETIKAHSDIVEALSSGNIDDYRSAVLAHYAPFRRMISNMLDAH
HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]