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The map label for this gene is rbsR [H]

Identifier: 62391466

GI number: 62391466

Start: 2768982

End: 2770064

Strand: Reverse

Name: rbsR [H]

Synonym: cg2910

Alternate gene names: 62391466

Gene position: 2770064-2768982 (Counterclockwise)

Preceding gene: 62391472

Following gene: 62391459

Centisome position: 84.38

GC content: 55.68

Gene sequence:

>1083_bases
ATGATTATGGGTAGGAAACAACAATACGGAACCCTCGCGTCCATCGCCGCGAAACTAGGTATCTCAAGGACCACAGTGTC
CAACGCCTACAACCGGCCGGAGCAACTCTCCGCAGAACTTCGCCAACGCATCCTCGACACCGCTGAAGATATGGGCTATC
TCGGCCCTGATCCGGTGGCCCGCAGCCTTCGTACACGCAGAGCAGGCGCAATCGGAGTGCTGCTTACTGAGGACCTCACT
TATGCCTTCGAAGATATGGCCTCCGTGGACTTTCTTGCCGGGGTGGCTCAAGCTGCTGGAGACACCCAACTAACGCTGAT
TCCTGCCTCGCCCGCGAGCAGCGTTGACCATGTCTCGGCTCAACAATTAGTCAACAACGCTGCAGTTGACGGAGTGGTTA
TTTACTCCGTTGCCAAGGGTGATCCACACATCGATGCCATCCGTGCCCGTGGTTTGCCCGCAGTCATCGCCGACCAGCCT
GCACGCGAAGAAGGCATGCCGTTTATTGCCCCAAATAACCGCAAAGCCATCGCCCCTGCAGCTCAAGCGCTAATCGACGC
CGGCCACCGCAAAATCGGCATCCTGTCCATCCGCCTAGACCGCGCAAACAACGACGGCGAAGTCACCCGCGAGCGCCTCG
AAAACGCCCAATACCAGGTACAACGCGACCGAGTCAGGGGTGCCATGGAAGTCTTTATCGAAGCGGGAATCGATCCCGGC
ACCGTGCCGATCATGGAATGCTGGATCAACAACCGCCAACACAACTTCGAAGTGGCCAAAGAACTTCTAGAAACACACCC
AGACCTCACCGCAGTACTCTGTACCGTCGATGCACTGGCATTCGGCGTTCTGGAATACCTTAAAAGCGTAGGTAAATCAG
CGCCTGCAGATCTATCCCTCACTGGTTTCGATGGCACCCACATGGCACTCGCACGGGATCTCACCACCGTCATCCAACCC
AACAAACTCAAAGGGTTCAAAGCCGGCGAAACACTGTTGAAAATGATTGACAAAGAATACGTGGAACCAGAAGTGGAATT
GGAAACTTCCTTCCACCCAGGTTCCACGGTTGCGCCAATCTAG

Upstream 100 bases:

>100_bases
TAAATGCTTATTGAAAAAGGATGTCAACATGAAAACTTATTGAAAATCGCAAAATCGCGTTAGACCTCGGATACGCCATA
GGGGTAACTGGTAGATTGAA

Downstream 100 bases:

>100_bases
GCTTGTGGCACTTTTCGTGCGTTTAGGCTCTCTTAAATCCCCAATCGCACGCTTTCCGCATACTGCATGCGGTGGTAGGC
GAGTTTCTCTAGGAAAATTC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MIMGRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLT
YAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQP
AREEGMPFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPG
TVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMALARDLTTVIQP
NKLKGFKAGETLLKMIDKEYVEPEVELETSFHPGSTVAPI

Sequences:

>Translated_360_residues
MIMGRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLT
YAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQP
AREEGMPFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPG
TVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMALARDLTTVIQP
NKLKGFKAGETLLKMIDKEYVEPEVELETSFHPGSTVAPI
>Mature_360_residues
MIMGRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLT
YAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQP
AREEGMPFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPG
TVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMALARDLTTVIQP
NKLKGFKAGETLLKMIDKEYVEPEVELETSFHPGSTVAPI

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994940, Length=359, Percent_Identity=25.0696378830084, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790369, Length=348, Percent_Identity=26.1494252873563, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787948, Length=345, Percent_Identity=26.3768115942029, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790194, Length=335, Percent_Identity=23.8805970149254, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789068, Length=307, Percent_Identity=23.1270358306189, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38862; Mature: 38862

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMGRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
RSLRTRRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSA
HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
QQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPA
HHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCEEECCCCCHHCCCCEECCCCCCCHHHH
AQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPG
HHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSL
CHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
TGFDGTHMALARDLTTVIQPNKLKGFKAGETLLKMIDKEYVEPEVELETSFHPGSTVAPI
ECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MIMGRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
RSLRTRRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSA
HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
QQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPA
HHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCEEECCCCCHHCCCCEECCCCCCCHHHH
AQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPG
HHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSL
CHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
TGFDGTHMALARDLTTVIQPNKLKGFKAGETLLKMIDKEYVEPEVELETSFHPGSTVAPI
ECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]