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The map label for this gene is amyD [H]

Identifier: 62391300

GI number: 62391300

Start: 2577199

End: 2578044

Strand: Reverse

Name: amyD [H]

Synonym: cg2704

Alternate gene names: 62391300

Gene position: 2578044-2577199 (Counterclockwise)

Preceding gene: 62391301

Following gene: 62391299

Centisome position: 78.53

GC content: 53.66

Gene sequence:

>846_bases
ATGCAAGCAACGCTGAAGAAGTACTTCCCAGTCTTTGTCTTGCCCACCCTTCTGGCATTCATGATTGCCTTCTTGGTGCC
GTTCATCGTGGGTTTCTTCCTCTCCTTTACGAAGTTCACCACTATCACCAACGCCAAGTGGGTTGGCATAGACAACTACG
TCAAAGCTTTCTCCCAACGCGAAGGTTTCATCTCAGCCTTCGGTTTCACCGTCCTCGTGGTCATCGTCTCCGTGATCACA
GTCAACATCTTCGCCTTCCTCTTGGCGTGGTTGCTGACCCGCAAACTCCGCGGTACCAACTTTTTCCGCACAGTCTTCTT
TATGCCGAACCTTATCGGCGGCATTGTGCTGGGTTATACCTGGCAGACCATGATCAACGCCGTGCTTTCGCACTATGCCA
CGACTATTAGCGCGGACTGGAAATTCGGCTACGCCGGCCTCATCATGCTACTTAACTGGCAGCTCATCGGCTACATGATG
ATCATTTACATCGCCGGCCTGCAAAACGTCCCACCAGAGCTCATTGAGGCTGCCGAACTCGACGGCGTCAACAAGTGGGA
GATGCTGCGGCACGTCACTATTCCGATGGTCATGCCATCCATCACCATCTGCCTCTTTTTGACTTTGTCGAACTCCTTTA
AGCTCTTCGACCAGAACCTGGCGCTGACCAACGGCGCTCCTGGCGGGCAAACTGAGATGGTGGCGCTCAACATCATCAAC
ACGCTGTTTAACCGTATGAATGTCGAGGGCGTCGGTCAGGCCAAGGCCGTTATCTTCGTCGTCGTTGTGGTCGTCATCGC
GTACTTCCAGCTGCGCGCGACCCGCTCCAAGGAAATCGAGGCTTAA

Upstream 100 bases:

>100_bases
CTTGTGCGCGAGCAGTTATTCCACATCCTCAGCCTCCTCTCCTCACCGCCTTCCCCGCTGGGAAACGTGTGGCACCACCT
GAAATTAAGGTTTCACCACC

Downstream 100 bases:

>100_bases
GTTATGACTACCAGCACTTCAGCGCAGGCCGCTCCGGCCTCGAAGAAGAAGGATCACCAGCTTCCCTCGGATAATAAGAC
CCACATGTCTGGCAGCGCCA

Product: ABC-type sugar transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MQATLKKYFPVFVLPTLLAFMIAFLVPFIVGFFLSFTKFTTITNAKWVGIDNYVKAFSQREGFISAFGFTVLVVIVSVIT
VNIFAFLLAWLLTRKLRGTNFFRTVFFMPNLIGGIVLGYTWQTMINAVLSHYATTISADWKFGYAGLIMLLNWQLIGYMM
IIYIAGLQNVPPELIEAAELDGVNKWEMLRHVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGAPGGQTEMVALNIIN
TLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA

Sequences:

>Translated_281_residues
MQATLKKYFPVFVLPTLLAFMIAFLVPFIVGFFLSFTKFTTITNAKWVGIDNYVKAFSQREGFISAFGFTVLVVIVSVIT
VNIFAFLLAWLLTRKLRGTNFFRTVFFMPNLIGGIVLGYTWQTMINAVLSHYATTISADWKFGYAGLIMLLNWQLIGYMM
IIYIAGLQNVPPELIEAAELDGVNKWEMLRHVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGAPGGQTEMVALNIIN
TLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA
>Mature_281_residues
MQATLKKYFPVFVLPTLLAFMIAFLVPFIVGFFLSFTKFTTITNAKWVGIDNYVKAFSQREGFISAFGFTVLVVIVSVIT
VNIFAFLLAWLLTRKLRGTNFFRTVFFMPNLIGGIVLGYTWQTMINAVLSHYATTISADWKFGYAGLIMLLNWQLIGYMM
IIYIAGLQNVPPELIEAAELDGVNKWEMLRHVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGAPGGQTEMVALNIIN
TLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=250, Percent_Identity=24, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787570, Length=255, Percent_Identity=23.1372549019608, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31549; Mature: 31549

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]