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The map label for this gene is yggS [C]

Identifier: 62390992

GI number: 62390992

Start: 2249085

End: 2249789

Strand: Reverse

Name: yggS [C]

Synonym: cg2364

Alternate gene names: 62390992

Gene position: 2249789-2249085 (Counterclockwise)

Preceding gene: 62390993

Following gene: 62390991

Centisome position: 68.53

GC content: 53.9

Gene sequence:

>705_bases
TTGGAGCGCCGCGAAGAGCTGCAGGTACGACTGCAGCAGGTGCAAGCGCGTATCGACGCGACCCTCAACGAACACAACCG
CCCCGAGGGCAGTGTACGTCTGTTGCCGGTCACCAAATTCCACCCCGTGGAAGACATCAAGATCTTACAAGAGTTTGGTG
TCACCGCAGTGGGAGAGAACCGCGAACAAGAAGCACGCGCCAAAGCACTCGAACTTCCCGACATGGACTTTCATATGATT
GGCCAAATCCAATCAAAGAAAGCCAACTCGATCGCCAGGTGGGCAGCTGCAGTGCACTCCGTTGATAGCGAGAAAATCGC
CGAAGCATTGGGCAGGGGAGTAGCCCTTGCATTGGATAGAGGCGACCGCACCAGTGACGAGCTTCCGTGTTTTATTCAAC
TGAGTTTGGATGGTGACCCGAGCCGAGGTGGAACTCCATTGAGCCAGGTCACACAACTTGCCGATTGCATCAGTGACACC
ACACATCTGCGTTTTGAGGGCCTCATGTGCGTCCCACCGCTTGGTTGGGGCCCTGAAAAAGCTTTTTCCCAGGCAAGAGA
CGTACTTTCAGGTTTAGAGGAACACTTTGACAGGTCTTTGGAATTTTCGGCAGGTATGTCTGGAGACCTAGTTGCTGCGA
TTAAACACGGCTCAACAATCGTGCGTGTCGGAACTGAAATTCTTGGGAACCGACCGCTAGCGTAG

Upstream 100 bases:

>100_bases
CCACGCTGCACCATCGAAGACGAAGATCTGTTTTCTTACCGCCGCGAAGGCACGACAGGCCGCCAGGCCGGCGTGGTGTG
GCTGCCAAAGGAGGCATAAA

Downstream 100 bases:

>100_bases
AAAATCAAGTTAAGGGTGTGACGAGCACCCCAGCTGCACATGAAATTTAAGACATTCCAGGTGAAGGGAAACTGCCATGT
CCATGCTCAAGAAGACTAAA

Product: pyridoxal-5'-phosphate dependent enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELPDMDFHMI
GQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDT
THLRFEGLMCVPPLGWGPEKAFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA

Sequences:

>Translated_234_residues
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELPDMDFHMI
GQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDT
THLRFEGLMCVPPLGWGPEKAFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA
>Mature_234_residues
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELPDMDFHMI
GQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDT
THLRFEGLMCVPPLGWGPEKAFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=242, Percent_Identity=28.9256198347107, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=31.0344827586207, Blast_Score=94, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17533025, Length=217, Percent_Identity=29.4930875576037, Blast_Score=71, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6319435, Length=244, Percent_Identity=28.2786885245902, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=31.1475409836066, Blast_Score=84, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25640; Mature: 25640

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGEN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEECCCC
REQEARAKALELPDMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEECC
GDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWGPEK
CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCEEEECCCCCCHHH
AFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECHHHHCCCCCC
>Mature Secondary Structure
MERREELQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGEN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEECCCC
REQEARAKALELPDMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEECC
GDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWGPEK
CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCEEEECCCCCCHHH
AFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9240446; 12948626 [H]