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The map label for this gene is ynfL [H]

Identifier: 62390904

GI number: 62390904

Start: 2155380

End: 2156240

Strand: Reverse

Name: ynfL [H]

Synonym: cg2268

Alternate gene names: 62390904

Gene position: 2156240-2155380 (Counterclockwise)

Preceding gene: 62390906

Following gene: 62390903

Centisome position: 65.68

GC content: 49.36

Gene sequence:

>861_bases
GTGAGCATCGATCTGCGAGACATTAAGCTTTTGGTAGCTGCCGTGGATTGTAGGTCGATTACAGGAGGTGCCCAGGCAGT
GGGGCTTTCACTGTCGGCAGCTAGCTCCAGGATCACGGCTCTGGAGAAGAAACATGGTGTGTCCCTATTGCAGAGACTAC
GTAGCGGAGTGGTTCCCACTGAAGCTGGCGAAGTAGTCCTAATTCAAAGCCGGAGACTTCTTGAGCAAGCCGACCTGCTC
ACTAGTGCTTTCCAACAGCACCAAAAAACGCACATCAAATTGGTGAGTAATACCTCCGCGGTGGATTCACTGACAGAGTT
TCTGGCAGCAACGCTTAATAAGTATCCAGAGCTCAACGTTGATTTGGAAGAAGAGTCAAGCAGTGAGGTTGCACGACGGG
TTCGAGAAGGCACTGCTGATTTAGGGGTGGTGTCAGTGCTGGAGTCTCGAACAGGTTTAGAAGCACACTTATTATGGGAA
GATCCTTTGATGATTGTCAGCACGTCAGCTAAGACATCAGTGGAAGCACTAAAGGGTCCAATGATTGGTTTATCTGCTGG
GATCCCACTTCAAACCTATATTGATGCGCACCTTAGAAGAGATGGAATCACTCCCAACTACCGAGTCCGTTTGCCCACGT
TAAGTGCGGTTTATGCGGTTGCTAGTACTGGAGCAGGATCGGCAATTCTTCCGCTTGGAACTACGAGAAGATTAGGGATC
CGGACAAAGAATGTACTTCCCATCGAGGAACCTTGGGCACAACGCGATGCATGGATGTTGGTGAAGGAAGGACGCACATT
AGCTGACGTAGAAAAATCTTTTATAGACGCCCTGTTGAGCTTTCGGGACGAGGAATCCTAA

Upstream 100 bases:

>100_bases
TCCTGCACAATAAGCAACAGGACAAATTTTGGCAGGATACTCCATCACCAAGCTTGCTAGAATTAGAAGCTCGCTTCGAA
TTTACGAAAGGCAACATTAG

Downstream 100 bases:

>100_bases
GTAGAACCCTAAAGGCATAAACCAACATCAGTGGAACTAATTGGACCGGTCGAGCGTTGATTAATCATTAACTCCAACGG
CGGAAAACGGTGGAAAGTGG

Product: transcription regulator LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSIDLRDIKLLVAAVDCRSITGGAQAVGLSLSAASSRITALEKKHGVSLLQRLRSGVVPTEAGEVVLIQSRRLLEQADLL
TSAFQQHQKTHIKLVSNTSAVDSLTEFLAATLNKYPELNVDLEEESSSEVARRVREGTADLGVVSVLESRTGLEAHLLWE
DPLMIVSTSAKTSVEALKGPMIGLSAGIPLQTYIDAHLRRDGITPNYRVRLPTLSAVYAVASTGAGSAILPLGTTRRLGI
RTKNVLPIEEPWAQRDAWMLVKEGRTLADVEKSFIDALLSFRDEES

Sequences:

>Translated_286_residues
MSIDLRDIKLLVAAVDCRSITGGAQAVGLSLSAASSRITALEKKHGVSLLQRLRSGVVPTEAGEVVLIQSRRLLEQADLL
TSAFQQHQKTHIKLVSNTSAVDSLTEFLAATLNKYPELNVDLEEESSSEVARRVREGTADLGVVSVLESRTGLEAHLLWE
DPLMIVSTSAKTSVEALKGPMIGLSAGIPLQTYIDAHLRRDGITPNYRVRLPTLSAVYAVASTGAGSAILPLGTTRRLGI
RTKNVLPIEEPWAQRDAWMLVKEGRTLADVEKSFIDALLSFRDEES
>Mature_285_residues
SIDLRDIKLLVAAVDCRSITGGAQAVGLSLSAASSRITALEKKHGVSLLQRLRSGVVPTEAGEVVLIQSRRLLEQADLLT
SAFQQHQKTHIKLVSNTSAVDSLTEFLAATLNKYPELNVDLEEESSSEVARRVREGTADLGVVSVLESRTGLEAHLLWED
PLMIVSTSAKTSVEALKGPMIGLSAGIPLQTYIDAHLRRDGITPNYRVRLPTLSAVYAVASTGAGSAILPLGTTRRLGIR
TKNVLPIEEPWAQRDAWMLVKEGRTLADVEKSFIDALLSFRDEES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=24.0677966101695, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788748, Length=249, Percent_Identity=25.7028112449799, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30991; Mature: 30860

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDLRDIKLLVAAVDCRSITGGAQAVGLSLSAASSRITALEKKHGVSLLQRLRSGVVPT
CCCCHHHHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EAGEVVLIQSRRLLEQADLLTSAFQQHQKTHIKLVSNTSAVDSLTEFLAATLNKYPELNV
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHCCCCCCC
DLEEESSSEVARRVREGTADLGVVSVLESRTGLEAHLLWEDPLMIVSTSAKTSVEALKGP
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHCCC
MIGLSAGIPLQTYIDAHLRRDGITPNYRVRLPTLSAVYAVASTGAGSAILPLGTTRRLGI
CEEECCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCC
RTKNVLPIEEPWAQRDAWMLVKEGRTLADVEKSFIDALLSFRDEES
CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SIDLRDIKLLVAAVDCRSITGGAQAVGLSLSAASSRITALEKKHGVSLLQRLRSGVVPT
CCCHHHHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EAGEVVLIQSRRLLEQADLLTSAFQQHQKTHIKLVSNTSAVDSLTEFLAATLNKYPELNV
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHCCCCCCC
DLEEESSSEVARRVREGTADLGVVSVLESRTGLEAHLLWEDPLMIVSTSAKTSVEALKGP
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHCCC
MIGLSAGIPLQTYIDAHLRRDGITPNYRVRLPTLSAVYAVASTGAGSAILPLGTTRRLGI
CEEECCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCC
RTKNVLPIEEPWAQRDAWMLVKEGRTLADVEKSFIDALLSFRDEES
CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]