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The map label for this gene is rbfA [H]

Identifier: 62390824

GI number: 62390824

Start: 2063102

End: 2063551

Strand: Reverse

Name: rbfA [H]

Synonym: cg2175

Alternate gene names: 62390824

Gene position: 2063551-2063102 (Counterclockwise)

Preceding gene: 62390825

Following gene: 62390823

Centisome position: 62.86

GC content: 54.67

Gene sequence:

>450_bases
ATGGCTGACAACGCCCGCGCGGCTCGTATGGCAAAGCGCATTCAAACTATCGTGGCCAGCGCCATTGAACGCGATATCAA
GGACCGCCGACTTGAGTTCGTCACAATTACTGATGTGACCATGACCGGTGACCTGCACGATGCAAAGGTGTTTTACACCG
TTCGTGGAGCTTCCATTGAAGAAGAACCAGATCTTGAGGCAGCAGCAGAGGCTCTTCACCGAGCACGCGGCCAGCTGAGG
AAGATCGTTGGCCAGCAGCTGGGTGTTCGGTTTACCCCGACCCTGACTTACAGCATCGATACCGTCCCAGAGGCATCCGC
ACACATGGAAGCTTTGTTGGATCGTGCTCGCAAGCGCGATGAGGAGCTGGCTAAATTGCGCGAAGGTGCAGCGCCTGCAG
GTGATGCAGATCCTTACAAGACTTCATCCAAGTCTGAATCTGAGGAATAA

Upstream 100 bases:

>100_bases
TAGGAATAGCAGGGTAGATAAACTTATTAAAATTTTTCCAATTCAGGGTAGAATTCCAAAAGAATTATTTCGACTCTGTG
AAGATGAGGAGTGGTCCACC

Downstream 100 bases:

>100_bases
CACCAGTGACGGATAATAGTCAGTTTCATGCTGCTTCAGCATTAGTCCAGGCAGCTCACACGGTTAGCGTTGTGGGGCAT
CTGCGACCCGATGCTGATGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIEEEPDLEAAAEALHRARGQLR
KIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRDEELAKLREGAAPAGDADPYKTSSKSESEE

Sequences:

>Translated_149_residues
MADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIEEEPDLEAAAEALHRARGQLR
KIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRDEELAKLREGAAPAGDADPYKTSSKSESEE
>Mature_148_residues
ADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIEEEPDLEAAAEALHRARGQLRK
IVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRDEELAKLREGAAPAGDADPYKTSSKSESEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 16470; Mature: 16338

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCEEEEEEECCCCC
EEPDLEAAAEALHRARGQLRKIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEEEECCCCCHHHHHHHHHHHHHHHH
EELAKLREGAAPAGDADPYKTSSKSESEE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCEEEEEEECCCCC
EEPDLEAAAEALHRARGQLRKIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEEEECCCCCHHHHHHHHHHHHHHHH
EELAKLREGAAPAGDADPYKTSSKSESEE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA